« Back to Setaria italica search


Detailed information on CNT30521160


BLAST search results

BLAST vs Swiss-Prot:
sp|P84516|PER1_SORBI, E-value = 2e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30221717Setaria italicaHordeum vulgare15.1631.9886.0879forward

Expression of CNT30521160

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MEVLNWSKNHQWLSANPWTSQLVRGEELVDGGGGRGELEDVVVGGGREDGDVGAGDGGAALGVDLGADVLDEVEHLLLEAHVGGEVALAVVQEDGSV

>peptide 2 (46 aa)
MSAQETVAPHWAWTLARMSSMRLSTSCWRPTLGGRLRSPLSRRMEAS

>peptide 3 (54 aa)
FIIAYYLWRMIKYNCYDDTAGSTMEVNNIGVLIKQGRQGPRRRRSGRWSRRSCA*

Sequence

>CNT30521160
ATTCATTATTGCTTACTACCTCTGGAGAATGATAAAGTATAACTGCTACGACGACACGGCCGGATCGACAATGGAGGTGAACAATATAGGAGTATTAATC
AAGCAGGGGAGACAAGGCCCTCGTCGCCGGCGTTCTGGACGGTGGAGCCGGCGGAGTTGCGCCTGAAGCAGGTGCGCCTGACCTCGCCGACGTTTCCCTG
TGGGCCCTTGAGGTTGCTCATCTTGATCATGGAGGTCTTGAACTGGTCGAAGAACCACCAGTGGTTGTCGGCGAATCCCTGGACGAGCCAGCTGGTGCGC
GGAGAGGAGCTCGTCGACGGTGGCGGTGGGCGGGGGGAGCTTGAAGACGTCGTTGTCGGAGGCGGGCGCGAGGACGGTGATGTCGGCGCAGGAGACGGTG
GCGCCGCACTGGGCGTGGACCTTGGCGCGGATGTCCTCGATGAGGTTGAGCACCTCCTGCTGGAGGCCCACGTTGGGGGGGAGGTTGCGCTCGCCGTTGT
CCAGGAGGATGGAAGCGTCGC