Detailed information on CNT30520893


BLAST search results

BLAST vs Swiss-Prot:
sp|O65101|PSAH_MAIZE, E-value = 3e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693639Setaria italicaOryza sativa35.3413.4794.57129forward
CNT30672463Setaria italicaSetaria viridis68.4951.55100250forward
CNT30178026Setaria italicaSecale cereale29.5919.3589.81108forward
CNT30318832Setaria italicaAsparagus officinalis33.155.9386.78121forward
CNT30101773Setaria italicaOryza rufipogon35.3415.6694.57129forward
CNT30496965Setaria italicaDigitaria exilis64.3869.1296.17235forward
CNT30116717Setaria italicaOryza nivara35.3415.6994.57129forward

Expression of CNT30520893

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MELPPRPFTATGCTETAAREAMAFAEYCRGYYR*

Sequence

>CNT30520893
GGATGCTGATGCATCGATCATAACAACCTGAAGCGGGTTGTAGGGCGAGGGCGCGTCGGAGCCGTAGAGGTCCCACTGCCCGGTGGTGTTGCCGATGTCG
TCGAGGTCGAAGTAGACGCTCTTGTCGCCGTACTTGGCCACCACGGCGGCGCGGGGCGCCGGCCTGACGGCGAGCCTCCTGCCGGAGATGGAGCTGCCGC
CGAGGCCCTTCACGGCGACCGGCTGCACGGAGACGGCGGCGAGGGAGGCCATGGCGTTCGCTGAGTACTGTCGAGGTTACTACCGGTAGTGTCCAAGTGC
GTACGTGCGCAAACTTAATTCGGCGGATCGTGCTAAGGATCCGAGACGTGTGTGGGAAGGGGCAG