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Detailed information on CNT30520234


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7W1|CB4C_ARATH, E-value = 1e-79

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30708177Setaria italicaGlycine max51.2351.4381.89541forward
CNT30340456Setaria italicaEragrostis tef39.9654.3892.18422forward

Expression of CNT30520234

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MVVWSGSLRWVAQLLSGPLPVAAACTAKPRKATMARRACLISASCSRSFFSGSAARPSGSK*

>peptide 2 (42 aa)
MRPFCGAGSARRVPRNVLAAAATDEAMAAAPPPPPGCAESVRW

>peptide 3 (34 aa)
MMPPASFLARFWSSESSSNCRYSTGFPSPNGSNP*

>peptide 4 (40 aa)
SLVHILQITSPHQQALLINETSINKLSDRSSHHTLSLITK*

Sequence

>CNT30520234
TCACTGGTTCATATATTACAAATCACAAGTCCCCATCAGCAAGCTCTCCTAATTAACGAGACCTCCATTAACAAACTATCGGATCGATCTTCCCACCATA
CCCTCTCACTCATCACAAAATGATATCACGCACGCATGGGTTCATCCATCTCCGCCAGCTGATAGAGATCACAGTTAATTAATTCAAGAACACGTTTCGA
TCGATGGACGACGGAGCAATGGCGGCTTAAGAGGATCCTCCGAACGTGTCGAAGATGGTGGTGTGGAGCGGGTCGCTGAGGTGGGTGGCCCAGTTGTTGA
GCGGGCCCTTGCCGGTGGCGGCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCATGGCGAGGCGCGCGTGCTTGATCTCCGCCAGCTGCAGCCGCTCCTT
CTTCTCCGGGTCGGCCGCCAGGCCGAGCGGGTCGAAGTAGGAGCCGCCCGGGTAGAGCCTCTTCTCCGGGTCGAGCTCGGCGTTGCGCTGGAACTCGATG
TAGCCGATCACGAGCACCTCGATCCAGATGAGTGTCGAGATGGAGAAGGGCAGCGGGTGGCGAGCATGGCCCAGCGGCCGTGGATGAGCTCGCACTCGCG
GAAACGCTGGAGGCCGAAGACCTCGCTGTAGGGCTGGAACGGGGTGGACTTGACGTCGGAGGACTCGAAGCGGGTGCCGATGATGCCGCCGGCCTCGTTC
TTGGCCAGGTTCTGGTCCAGCGAGTCCAGCTCGAACTGCAGGTACTCCACGGGCTTCCCGAGCCCGAACGGGTCGAACCCGTAGTCGCCCACCAGTGACC
CGTCGAGGTAGTCGGGCGCCACCGCGCCGGGGAACCAGAGCGGCCGGTCGGAGACCGACGACGTCTTGGCCGCCTTCTTCGGGGCGGCGGTCTTCTTGCC
GCCGCCGAACCCGAACCGGGCCACGATGCGCCCGTTCTGCGGCGCTGGGTCCGCCAGGCGGGTGCCCAGGAATGTGCTCGCCGCGGCGGCCACCGACGAA
GCCATGGCTGCTGCTCCTCCTCCTCCTCCTGGGTGTGCTGAGAGCGTCAGGTGGTG