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Detailed information on CNT30519750


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07300|ATPD_SORBI, E-value = 2e-83

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30226052Setaria italicaHordeum vulgare12.4328.3393.91115forward
CNT30441539Setaria italicaAegilops tauschii29.517081.68273forward

Expression of CNT30519750

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MAARKLSTTTLRKLTTWGCSSDDLAISSMSWVFSSRGTVGLSKNSATASSAKIFSSFSRSDTVCSSVPFSAATSDSAVA*

>peptide 2 (79 aa)
MTPQADQTSRGTEGNSNSDAISSICFRTLMSMRLEPSRPYCTVKPAMSSGLSCVLRRTSCDSSCTTEVTVATSVPVSAL*

Sequence

>CNT30519750
CAGTAATGTAGTATTATTCACTCATTCAATCAGAGAATGATACAGAAGAAGAGAAGGGAGAGAAGCAACAGAAAGGACCTAGGCTTCAAGGGCGAGGAAT
GACGCCGCAAGCCGATCAGACTTCGAGAGGGACGGAGGGCAACTCGAACTCTGACGCGATCTCCTCAATCTGCTTCCGGACGCTCATGTCGATGAGGTTG
GAGCCGTCGCGCCCGTACTGCACGGTGAAGCCGGCGATGAGCTCCGGGTTGAGCTGCGTCTTGAGGCGGACGTCCTGCGACTCGAGCTGCACGACGGAGG
TGACGGTGGCGACCTCGGTGCCCGTGAGCGCGTTGTAGACGTTCTCGAACTCGGCGACGATCTGCGGCACGATGGCCGCGCGGAAGTTGTCGACGACGAC
GTTGAGGAAGTTGACGACGTGGGGCTGCAGCTCGGACGACTTGGCGATCTCGTCGATGAGCTGGGTCTTCTCCTCGCGGGGCACGGTGGGGTTGTCGAAG
AACTCGGCGACGGCCTCGTCGGCGAAGATCTTCTCCAGCTTCTCGAGGTCGGATACCGTCTGCTCGAGTGTGCCGTTCTCGGCGGCCACCTCGGACAGCG
CGGTCGCGTAGCTCTCGGCCGCGGCGTCGGCCGCGGCGCGGGGCCTGGCGAGGTCCCCGCGGCGGCGGGGCGGTGCCAGGCGGAGCGAGGGGAGCCCCCG
CGCCGCGCGGGCGAAGGATGCGGAGGACCGGGGCGCCGCCGCGACGGAGGAGTGGGACGCCGCGGCGGCGGCCGGGCGGAGGGTGAAGGAGGCGAGGCGG
AGCGCGGCCATCACGTCGCGGAGCGTGCGGCGGCAGTGGACTCGGGGGGAGTGCGGCGGCAGTGGCTGGCTGGCCTGGCCTGGCTTTGGTTTGGGAGGGC
GAGACTGGACGAGAGAGGAAGAAGG