Detailed information on CNT30519738


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10716|CYSP1_MAIZE, E-value = 3e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691218Setaria italicaOryza sativa33.3925.2787.77188forward
CNT30639487Setaria italicaNymphaea colorata13.3220.685.3375forward
CNT30376792Setaria italicaArabidopsis thaliana13.3222.398875forward
CNT3092670Setaria italicaSolanum tuberosum22.3819.381.75126forward
CNT30143899Setaria italicaMedicago truncatula13.6838.1284.4277forward
CNT30311982Setaria italicaCamelina sativa13.3220.4990.6775forward
CNT30685650Setaria italicaTriticum urartu14.3934.0392.5981forward
CNT3051634Setaria italicaAmborella trichopoda37.4818.9180.09211forward
CNT30116007Setaria italicaOryza nivara31.9726.5587.78180forward

Expression of CNT30519738

Peptides detected in this lncRNA

>peptide 1 (33 aa)
SLDNTQVQLGSLGRESPNAVEQSYKSNPYAHQI*

>peptide 2 (34 aa)
MHLIPNTNLSASNPLQLHIFAALYITAHRWEHKY*

>peptide 3 (36 aa)
HLITRRCSLAVWVVNLPMRLSKATNQTHMHTKYNTI*

Sequence

>CNT30519738
CTCACTTGATAACACGCAGGTGCAGCTTGGCAGTTTGGGTCGTGAATCTCCCAATGCGGTTGAGCAAAGCTACAAATCAAACCCATATGCACACCAAATA
TAACACGATTTAGATGGGAGCACACCATATATTTATGTACACACTATTCAAAAGTTCTGCAGATTAAAAAGCGTATACAGATCTGGTGATAACTTTGCTA
CATCCAAATAGCTTGTAGCATGCATCTCATACCAAACACAAACCTTTCAGCAAGCAACCCATTGCAGCTTCACATCTTTGCTGCCTTATATATAACAGCA
CACAGATGGGAGCATAAATATTAGCAGATCTTGTAGTATCCATTCTCACCCCAGTTCTCACCCCAAGAGTTCTTGATGATCCAGTAGGGCTTCTCCTTCA
GGCGGATGGGGGCAAAACCCGCCGCACCATAGCCAACAAGGAGAACACCGTGGTCAAGGTGCCTGCCACAGATGTATGGGCATGACACACCACCGATGTA
TGTCTGCATGTACGCAGCATTGATACCAACTGCATGGAACAGAGGATAAGCATCAGTAATTTC