CANTATAdb - search

Detailed information on CNT30519697

BLAST search results

BLAST vs Swiss-Prot:
sp|M1BJF6|JOKA2_SOLTU, E-value = 3e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30584006	Setaria italica	Echinochloa crusgalli	99.8	101.19	90.22	511	forward

Expression of CNT30519697

Peptides detected in this lncRNA

>peptide 1 (99 aa)
LQLCKEGIPFVDATQIIHRQLQVVIVLPKDFLVQINLPKAHFLQLPQQLLFIVTIYVKRLRCRCRHTNRRHKSSSSGTGHGNINDKVCRSCCRHRGSNY*

>peptide 2 (47 aa)
MSKGSGAGAGTLTEGTKAAAVALDMGTSTTRFAGAAAGIEVATTRAG*

>peptide 3 (36 aa)
MFTSIRLVVFALLPSGGRFRLIAVFLLLSLTKEGSST

Sequence

>CNT30519697
CTCCAGCTCTGCAAGGAGGGGATCCCATTCGTTGACGCCACACAGATCATCCACAGACAGCTCCAGGTTGTAATTGTTCTGCCTAAGGATTTCCTTGTTC
AGATCAATCTGCCTAAAGCCCATTTCCTCCAGCTCCCTCAGCAGCTTCTCTTCATTGTGACCATCTATGTCAAAAGGCTCAGGTGCAGGTGCAGGCACAC
TAACAGAAGGCACAAAAGCAGCAGCAGTGGCACTGGACATGGGAACATCAACGACAAGGTTTGCAGGAGCTGCTGCAGGCATAGAGGTAGCAACTACTAG
AGCAGGCTGAGATTTCTTGGGCTCTGGAACATCACTCGGATAGAAGTGGAACTCTTTAGTGCGTTTGGCATGTGCACTAAGGGCTGGGTCAACAGGCTCA
ATGTTCACATCAATTAGGCTAGTTGTGTTTGCACTACTGCCTTCTGGTGGCAGATTCAGATTAATAGCAGTGTTCCTGTTATTGTCATTAACAAAGGAAG
GATCTTCCACCT