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Detailed information on CNT30519050


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678839Juglans regiaSetaria viridis79.2965.1195.63892forward
CNT30619379Juglans regiaSesamum indicum69.3310096.54780forward
CNT30200729Juglans regiaPisum sativum96.0944.4597.131081forward
CNT3048154Juglans regiaPrunus dulcis92.8999.6297.221045forward
CNT30285964Juglans regiaTriticum aestivum73.4270.7896.13826forward
CNT30224448Juglans regiaHordeum vulgare70.4100.1394.07792forward
CNT30544510Juglans regiaBrassica napus95.8267.3896.661078forward
CNT30239033Juglans regiaBrassica oleracea95.8279.3896.571078forward
CNT30444212Juglans regiaAegilops tauschii79.8269.0295.77898forward
CNT30261854Juglans regiaBrassica rapa77.9682.2797.04877forward
CNT30206557Juglans regiaHelianthus annuus72.8938.0297.44820forward
CNT30365254Juglans regiaSorghum bicolor79.3898.6794.29893forward
CNT30413997Juglans regiaPapaver somniferum74.2210095.93835forward
CNT3036408Juglans regiaCucumis melo93.9610098.491057forward

Expression of CNT30519050

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MIRFMDFSRRCRQRTAHIASIRTLHRTIQSVGATGGVYKGQGRSQRELMTRAY*

>peptide 2 (71 aa)
RSFCWAGIDNDPSAGSPTETLLRLLLPLNDKVHGLLATLPAANRPHRLDPNTSPDHSIGRSDGRCVQRAGT*

>peptide 3 (30 aa)
MMRRRHDGRAIRRVIMNHQSNGQSPRRPFI*

>peptide 4 (44 aa)
MKFQRLPGPVGQGYKLVEYISVARVRPRTSKGITDLLLPQTSLA*

>peptide 5 (44 aa)
MHPFQKSGFVARISSRITTVIRVADTIKQTITDLMSHSQFHSLN*

Sequence

>CNT30519050
ACAGGTCGTTCTGCTGGGCAGGTATCGACAATGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGATAAGGTTCA
TGGACTTCTCGCGACGTTGCCGGCAGCGAACCGCCCACATCGCCTCGATCCGAACACTTCACCGGACCATTCAATCGGTAGGAGCGACGGGCGGTGTGTA
CAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATG
AAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGCTATAAACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG
ACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCGGCCATAGTCCCTCTAAGAAGCTGGCCGCGGAAGGTCACCTCCGCATAGCTAGTTAGCAGGCTGAG
GTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTC
AATCCTTACTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGAGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCT
CCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTCACCACCATTGTAGGCCTCTATCCTACAATCGAAAGTTGATAGGGCAGAAATTTGAATGATG
CGTCGCCGGCACGATGGCCGTGCGATCCGTCGAGTTATCATGAATCATCAGAGCAACGGGCAAAGCCCGCGTCGACCTTTTATCTAATAAATGCATCCCT
TCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCAGATACCATCAAACAAACTATAACTGATTTAATGAGCCA
TTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAGGATCAACCAGGTAGCATTC
ATTCTCGATGCCGGCACCGCACGTA