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Detailed information on CNT30518188


BLAST search results

BLAST vs Swiss-Prot:
sp|O22582|H2B_GOSHI, E-value = 7e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675682Juglans regiaSetaria viridis22.4743.7186.36198forward
CNT30522940Juglans regiaSetaria italica21.4526.8585.71189forward
CNT30315505Juglans regiaCorylus avellana27.0152.0888.24238forward
CNT30379403Juglans regiaManihot esculenta34.5154.0982.24304forward
CNT30526697Juglans regiaPhaseolus vulgaris22.1374.1487.18195forward
CNT30200173Juglans regiaPisum sativum41.7761.6482.88368forward
CNT3094085Juglans regiaSolanum tuberosum33.7158.8180.47297forward
CNT30180212Juglans regiaSecale cereale31.5636.7285.61278forward
CNT30283395Juglans regiaTriticum aestivum31.2128.1584.73275forward
CNT30383318Juglans regiaTriticum turgidum31.2129.9284275forward
CNT30565715Juglans regiaActinidia chinensis34.5138.7389.47304forward
CNT30510004Juglans regiaSolanum lycopersicum13.854084.43122forward
CNT30552407Juglans regiaOryza glaberrima23.7230.1285.17209forward
CNT30171046Juglans regiaTrifolium pratense32.248083.45284forward
CNT30435607Juglans regiaAegilops tauschii31.5635.3785.25278forward
CNT30244799Juglans regiaAvena sativa31.5638.7284.89278forward
CNT30660053Juglans regiaTriticum dicoccoides35.346.9184.24311forward
CNT30447591Juglans regiaSaccharum spontaneum31.951.5684.34281forward
CNT303693Juglans regiaZea mays14.9838.2689.39132forward
CNT30606042Juglans regiaGossypium raimondii21.6862.6290.58191forward
CNT30719869Juglans regiaTriticum spelta31.2148.1684.73275forward
CNT30346527Juglans regiaEragrostis tef20.0983.8985.31177forward
CNT30360275Juglans regiaLactuca sativa25.7750.7885.02227forward
CNT30570929Juglans regiaVitis vinifera31.5641.4385.61278forward
CNT3052765Juglans regiaAmborella trichopoda17.9331.190.51158forward
CNT30100801Juglans regiaOryza rufipogon15.8921.688.57140forward
CNT30174435Juglans regiaVigna angularis33.2643.7384.98293forward
CNT30557628Juglans regiaPanicum hallii19.6431.0684.39173forward
CNT3065708Juglans regiaSelaginella moellendorffii14.5336.8989.06128forward
CNT30114697Juglans regiaEutrema salsugineum34.7349.9282.68306forward

Expression of CNT30518188

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSLMKLFMIPMALLEIPISGWTCFNTLKM*

>peptide 2 (34 aa)
MAECGMLIWRSLKFKSTAVMRYLSRSLVYSDEIDW

>peptide 3 (44 aa)
MAECGMLIWRSLKFKSTAVMRYLSRSLVYSDEIDWRRWSGRNEM*

>peptide 4 (49 aa)
YNLRAGELGDGLCPLGNGVLSQLTRQHEAHSGLDFPGGDGRLLVVPREP*

>peptide 5 (71 aa)
MSPRSSWSASSSCRQQRLHLPSGASSRLASSRQLWGPSEFSFLGKQTQTETRKGERVRVSLESIDIYLRWK*

Sequence

>CNT30518188
TACAATTTAAGAGCTGGTGAACTTGGTGACGGCCTTTGTCCCCTCGGAAACGGCGTGCTTAGCCAACTCACCAGGCAACACGAGGCGCACAGCGGTCTGG
ATTTCCCGGGAGGTGATGGTAGGCTTCTTGTTGTACCTCGCGAGCCGTGAAGCCTCCTGAGCGAGCTTCTCGAAGATGTCGTTGATGAAGCTGTTCATGA
TCCCCATGGCCTTGCTGGAGATCCCAATATCAGGGTGGACCTGCTTCAACACCTTGAAGATGTAGATCTTGTATGTCTCCACGCTCTTCTTGGTCCGCTT
CTTCTTCTTGTCGCCAGCAACGGCTCCACCTTCCTTCGGGAGCTTCTTCTCGGCTGGCTTCTTCTCGGCAGCTTTGGGGGCCATCGGAATTTTCTTTTCT
CGGGAAACAAACGCAAACAGAGACGCGAAAGGGAGAGAGGGTTCGAGTCAGTTTAGAATCTATAGATATATACTTGAGATGGAAATGAAATGTAGTTGGT
ATTTCGTATTTATAAACATGTGAGGTCGGTTTTGATTGGTGAATGGGAGAAGCCACAGATCACTGACATGGCAGAATGTGGGATGTTGATCTGGAGGAGT
TTGAAGTTTAAATCGACGGCAGTAATGAGATACTTGAGCCGGTCCTTGGTTTATTCCGACGAAATTGATTGGAGGAGATGGAGCGGTCGAAATGAAATGT
AGTTGGTATTTCGTATTTATAAACATGTGAGGTCGGTTTTGATTGGTGAATGGGAGAAGCCACAGATCACTGACATGGCAGAATGTGGGATGTTGATCTG
GAGGAGTTTGAAGTTTAAATCGACGGCAGTAATGAGATACTTGAGCCGGTCCTTGGTTTATTCCGACGAAATTGATTGGAG