CANTATAdb - search

Detailed information on CNT30517058

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FHW7|SKP1B_ARATH, E-value = 1e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30303844	Juglans regia	Triticum aestivum	3.45	28.74	87.32	71	forward
CNT30666847	Juglans regia	Triticum dicoccoides	3.4	28.11	87.14	70	forward
CNT30112966	Juglans regia	Ficus carica	10.15	31.19	84.21	209	forward

Expression of CNT30517058

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MLNVLRISSGVLPLIMSATVWQVRSSKLLMFR*

>peptide 2 (42 aa)
MDTEGKTSKQNPRIKTAKKIYQGKVFNGRIKTQIIRKIKKIK*

>peptide 3 (67 aa)
MTLERILLVTFGSGMPLSAQSSSIMCLIVWDSSATASSTSKVSPSELFSVIFLPDDIVFSYNANPRL*

>peptide 4 (42 aa)
MQEQITESLQRPLCYKSLSMNLTKKYHNLDALGADCRFTGQC*

Sequence

>CNT30517058
AGTTAACATCATATTAGCAAATACATGGAGAGGGCATGGGCTGGGGCAAAGGTTTAAGCAAAACAGACATTGGTTACAGCAGTGACACCTAGAATAGCAC
TTAATACCTAGAAGTCTTGCACATTGAAACAGCACCCCTTTCCTTAGCACAAAAGAACAAGAGCCACAAAAAACAGATCCGTTCAATTTAAATCTTTCAC
TCGAAGGCCCATTGGTTCTCCCTGCGAACCTCCTCTTCTTCCTCTTGTGTGAAGTCATTCTTGATGTTGAATGTCTTGCGGATTTCCTCTGGAGTTTTGC
CCTTGATCATGTCAGCCACAGTCTGGCAAGTCAGATCCAGCAAGCTCTTGATGTTCAGATAGTTTGCAGCCTACAAGAACATATTCCGAAGTGAACCGCC
TTCCAACCAAATATGGTAGAAGAATACAACACCAGTAGAAGTTTAGTGCTTGTTTGATGCAAGAACAAATAACAGAGTCCCTTCAACGGCCCCTTTGTTA
TAAATCTCTCTCAATGAACTTGACAAAAAAATACCACAATCTTGATGCTCTAGGAGCAGATTGCAGGTTCACAGGACAGTGCTAAGTCATCATGTAATTG
GGCTATACCTATTATTTTCTATTAATAAATTATCGATTACCTATAAAAGAAAAGGAAATTCAAGATTGAAAAGTCAAGAGCAAGTCTATTGTTACAAAAG
CAATATTTCACAAGAAATAAAACAGAAAGAGCTACTAAACCCATATATGAACACAGAAAAAAGATTGCAAAAAAGCAACAAGGATGATAAAAGAAATATT
ATTGATTAGTGAAAAATCAATCCTTGAAACAAAGGAGTAAAGGGGTCTCGTAGGAATTCGTTACATGAACTTCAAAGCACTTAACCATTAGCAACAATTT
CTTCCGTCAGATTCATTGAAACACAAAGCTTTCCCTTTTTGCAAGCACACTTGTCACGGAATCCAACAATTATATAAATCATCAGCATTTCTTAACTAAC
TTCAGCCATGGATCCAACCCCAAGTACTCGAGTAAAACAAAGCAGATAACTAGCCAGGTGTATGAATACAACAATGCAAAAGGATTGGGATATGAAGAAT
TAATAGGAATGATTTATTTGATCTGCTATGATCATGAGGGTTAAAGGTTTAACTCCAACAGTCTAGGATCGAAACCTGGCTCTGATACCAATTGTTAAAG
ACTCAACCATTGATCTAAAAGCCCTAGAACTGATGGATACTAATTGGTTAAACCTTTAAAGGATTTTAACATGATCTCACAACAACTCCAGAAGAAAAGT
GAAGGTGGTAATTAGCAAAACGTCACGGTTCCATTACACCCAAAAAATAATACGGTGGTATAAATTCTCAATTATCAAACCAGGCTCAGAATACTCAAGA
AAAAGGGAAAAACTGAAGAAAAAAGATAGATTATATAGAAGAATTAGCGTTTCTCCGGTTCTTCCAGAACTTTCTCAACACCCAAAAAACTTTATGGACA
CCGAAGGCAAGACATCGAAGCAAAACCCTAGAATAAAAACTGCTAAAAAAATCTACCAAGGAAAAGTATTCAACGGCAGAATCAAAACCCAAATCATAAG
GAAAATAAAAAAAATAAAATGATCAAATATTGAGGGGTTTGAATTAGAAGGGAAAAATACGGACCAGGATTAGATCGAAAAGGGTGGCTTGGTCGACACT
GACGAACTCGGCGTCCCAAGTCTTGAGGGCCTCGTCGAGGGAAGCAGCGCGGTCCTCGGCCTTCGGGACCTCTACGTGCTTCTTGCAGTACTCGATGACC
TTGGAGAGGATCTTGCTGGTCACGTTCGGGAGCGGGATGCCATTATCGGCGCAGTCGTCCTCGATCATGTGCTTGATCGTTTGGGACTCTAGCGCCACGG
CCTCGTCCACCTCGAAGGTCTCGCCGTCGGAGCTCTTCAGCGTTATCTTCCTCCCCGACGACATCGTTTTTTCCTATAACGCAAACCCTAGGCTATAGGA
CTTTCTAGAGAGACGCCCGGAGAGAGGGATCGGATAAGACTCGTCGAGTCAGAGACAAC