Detailed information on CNT30515


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696608Zea maysOryza sativa4522.7692.9399forward
CNT30522315Zea maysSetaria italica41.8215.4988.0492forward
CNT30555236Zea maysOryza glaberrima3012.8295.4566forward
CNT30578017Zea maysOryza barthii4529.1292.9399forward
CNT30117741Zea maysOryza nivara23.1816.0494.1251forward

Expression of CNT30515

Peptides detected in this lncRNA

>peptide 1 (71 aa)
RRGTRSTWASCNRPPGSRSSPRPSGTRTARRRRRRGPTCPGRRPGTASWLRTRRTSVRCQGPRVPSSGPGP*

>peptide 2 (72 aa)
RVEGPGVLGLLVIVHLDHALHHVRRVHGQPEGGAGEARRVRAAGQVLLRGFVHAEHQCVARDLASHRRDQALE

Sequence

>CNT30515
CGCGTCGAGGGACCCGGAGTACTTGGGCTTCTTGTAATCGTCCACCTGGATCACGCTCTTCACCACGTCCGTCGGGTACACGGACAGCCAGAAGGCGGCG
CCGGCGAGGCCCGACGTGTCCGGGCCGCCGGCCAGGTACTGCTTCGTGGCTTCGTACACGCCGAACATCAGTGCGTTGCCAGGGACCTCGCGTCCCATCG
TCGGGACCAGGCCCTTGAAG