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Detailed information on CNT30509056


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT001200, E-value = 1e-109

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546222Solanum lycopersicumIpomoea triloba405.1488.7580forward
CNT30379963Solanum lycopersicumManihot esculenta39.538.9288.6179forward
CNT30507162Solanum lycopersicumNicotiana attenuata43.541.2386.2187forward
CNT30163770Solanum lycopersicumPistacia vera39.52.7484.8179reverse complement
CNT3092105Solanum lycopersicumSolanum tuberosum96.514.2497.93193forward
CNT30566470Solanum lycopersicumActinidia chinensis41.55.7784.3483forward
CNT30598722Solanum lycopersicumFraxinus excelsior375.4190.5474forward
CNT30655162Solanum lycopersicumRosa chinensis31.512.6588.8963forward
CNT30573760Solanum lycopersicumVitis vinifera402.8288.7580forward
CNT3026058Solanum lycopersicumPopulus trichocarpa406.878580reverse complement

Expression of CNT30509056

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MDSSALSIYDFKHIDRFVGLHMSGALFYPLFDHFLD*

Sequence

>CNT30509056
GTTATGGGAGTGGAGCTCCTTGAAGTCCAACAGAAGATCTAACAGGTTAGATTGAGCTGCTGACCTATGGATTCCTCAGCCCTATCTATTTATGATTTCA
AACATATAGATAGGTTTGTGGGTTTGCATATGTCAGGAGCTTTATTTTACCCTTTGTTTGATCATTTTTTGGATTGAAGGGAGCTCTACATTCATTTCTT