Detailed information on CNT3050887


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692499Cucumis sativusOryza sativa46.6724.4981.2133forward
CNT30278778Cucumis sativusChenopodium quinoa45.9626.3683.97131forward
CNT30727179Cucumis sativusCorchorus capsularis42.1122.2686.67120forward
CNT30683583Cucumis sativusTriticum urartu37.8927.282.41108forward
CNT30361540Cucumis sativusSorghum bicolor46.6730.582.71133forward
CNT30595951Cucumis sativusOryza meridionalis72.9896.7479.81208forward

Expression of CNT3050887

Peptides detected in this lncRNA

>peptide 1 (74 aa)
GSKDRWGRVSPSLASTVRCSISEPLSIVVRDVKPKSMRNCSWDTLTETERVSTHKVRTFSIWIIQSVEEIWGGR*

Sequence

>CNT3050887
GGAAGTAAGGATCGATGGGGCCGAGTTTCTCCTTCACTAGCTTCGACAGTTCGATGTAGCATTTCTGAACCGTTGAGCATCGTAGTCAGGGATGTTAAGC
CAAAGTCCATGAGAAACTGCAGTTGGGACACCCTCACGGAGACTGAAAGGGTATCCACGCACAAAGTCCGCACCTTCTCTATATGGATCATACAGAGTGT
TGAAGAAATTTGGGGTGGCCGGTGATAGAAGGTTCTTTATGTGCTGCTCGAGCGCATTGATATCTTTGTCTGAGGGGTCCTTTGC