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Detailed information on CNT30508313


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3090003Solanum lycopersicumSolanum tuberosum41.6185.0796.3513forward

Expression of CNT30508313

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MENPKGGGKSSKKNGLTTSNRLVVGEMVMGVEVKHRWEEPRTSQVAAVKHR*

>peptide 2 (57 aa)
MVEVENCNKLVVSRSILVEVENCNKLVVARSILVEVEVTCSKLVTCNILLVKVTCSI*

Sequence

>CNT30508313
TTACTTAAATCTCCAAAGATAAATATTAAGAATTATTAATACAAAAATCACACACAACAATCAAAGCCGGTCATATTAGGAAGCATAAAAGGAAATGGAA
AACCCCAAAGGTGGTGGAAAATCATCGAAAAAGAATGGATTGACTACTAGTAATAGGTTGGTGGTGGGGGAGATGGTGATGGGGGTGGAGGTGAAGCATA
GGTGGGAGGAACCTCGTACTTCTCAGGTGGCGGCGGTGAAGCATAGGTGACAGGTTCCTCGTACTTCACAGGTGGCGGCGGGGAGGCATAGGTTGGTGTT
TCTTTGTAGTATGGTGGTGGTGGAGGTGAGTAGTATGTAGGTGATTGTTCATAGGTCTTTGGAGGAGGTGGAGAAGATTTATAGGAAGGTGTAGATTCTT
GGTAGTATGGTGGAGGTGGAGAATTGTAATAAGTTGGTGGTTTCTCGTAGTATTTTGGTGGAGGTGGAGAATTGTAATAAGTTGGTGGTTGCTCGTAGTA
TTTTGGTGGAGGTGGAGGTGACTTGTAGTAAACTGGTGACTTGTAATATTTTGTTGGTGAAGGTGACTTGTAGTATTTAGATGGAGTGGGTGATTTGTAA
TATTTTGTTGGAGATGGTGATTTGTAGTAATAGTTTGTTGATGGAGTAGGTGACTTGTAGTACTTTGTTGGAGATGGGGACTTGTAGTACTTTGCGGGTG
ATGGGGACTTGTAGTAATACTTAGAAGGAACGGGTGATTTGTAATAATGCTTTGAAGGAGTTGGGAACTTGTAGTAATACTTTGTTGCAACCGGTGACTT
GTAGTAGTGCTTTGAAGGAACATGTGACTTGTAATACTTGGTTACAATGGGTGACTTGTAGTAATAATGCTTTGAAGGAACATGTGACTTGTAATATTTT
GCTGGTGATGGCGATTTGTAATAAGCGTGCTTTGAAGGTGCTGGTGACTTGTAGTAATAATGTGATGGATAAGGTTTCTTGTAATATGGAGTAGGCACAT
GATACTTGGAAGGAGATGGTGATTTGTAGTACTTGTTAGAGTTGTGAGAAGGTGAGGGTGAAGTATACTCATAAGAGTAATCAGCAACAACAGTGCTGGC
TACTAAGCAAATTGCCAAAGCAACAGTTAGAAAAGACCATTGCCCCAACTTCCCTAAGCTCTCCATTTTGATTTGTAACAAATTATGCTTAGAGAAGTGA
AGGATAGAACTAAAGAATTGTGTTGCATAGCTG