Detailed information on CNT30500911


BLAST search results

BLAST vs Swiss-Prot:
sp|Q651E8|SKP20_ORYSJ, E-value = 2e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671810Coffea canephoraSetaria viridis12.5526.3290.7765forward
CNT30317831Coffea canephoraCorylus avellana21.2422.4985.45110forward
CNT30516841Coffea canephoraJuglans regia22.5914.4486.32117forward
CNT30628805Coffea canephoraVigna unguiculata21.8121.1685.84113forward
CNT30493928Coffea canephoraOlea europaea22.7816.5787.29118forward
CNT3097013Coffea canephoraSolanum tuberosum22.7826.5888.14118forward
CNT3060039Coffea canephoraArabidopsis lyrata16.0221.3984.3483forward
CNT30259882Coffea canephoraBrassica rapa18.3424.8787.3795forward
CNT30137317Coffea canephoraLolium perenne19.113388.8999forward
CNT30686076Coffea canephoraTriticum urartu16.630.683.7286forward
CNT3049296Coffea canephoraCucumis sativus17.7638.6685.8792forward

Expression of CNT30500911

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MLKVLRISSGVLPLIMSKRVPWSTLTKSASKDLRSSSEDLSPSEDFGASTCFLQYSMTLAKILLVTLGRGMQVSAQLSSIMCLMVC

>peptide 2 (36 aa)
MFLTVLDDLSQDLAGDVGQRDASIGAVVLDHVLDGLR

Sequence

>CNT30500911
CTTTCAAACATAAAACAGCAACACATTCATAGCAATAACAAGTGAGGGTTTGAAGTCACGTAGTTCATTGCACTATGATGCCAACCATCATTAAAGTAAT
AGGATGACAAAATATTTACTACTACTGTCAAGAAATCCATAATAGCATTCAAAACAAAAGACCCATAATATTGACATTTCAAACTTCCACTTCACTCAAA
TGCCCAAGCATTCTCCCTGCGAACCTCCTCTTCTTCCTCAGGAGTGAAATCATTCTTGATGTTGAAAGTCTTGCGGATCTCCTCTGGCGTCTTGCCCTTG
ATCATGTCGAAAAGAGTGCCCTGGTCGACTTTGACGAAGTCAGCATCGAAGGACTTGAGATCCTCGTCGGAGGACTTGTCGCCGTCGGAGGACTTCGGGG
CCTCGACATGTTTCTTACAGTACTCGATGACCTTAGCCAAGATCTTGCTGGTGACGTTGGGCAGAGGGATGCAAGTATCGGCGCAGTTGTCCTCGATCAT
GTGCTTGATGGTCTGCGA