Detailed information on CNT30498790


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677643Digitaria exilisSetaria viridis45.9545.3383.42374forward
CNT30521892Digitaria exilisSetaria italica67.6946.1185.12551forward
CNT30659258Digitaria exilisTriticum dicoccoides13.5151.8981.82110forward
CNT30445578Digitaria exilisSaccharum spontaneum19.0438.9483.87155forward
CNT30110Digitaria exilisZea mays37.8439.5979.55308forward
CNT30109240Digitaria exilisOryza longistaminata9.2126.9885.3375reverse complement

Expression of CNT30498790

Peptides detected in this lncRNA

>peptide 1 (51 aa)
QLKKNTRILHHEVYSLKYVRNVAVLYSVKTRKPGFKSLQTTRIQFVALLAT*

>peptide 2 (36 aa)
MVLGLWNNPGRLLTGAGHASRAVKLRQAVGSVELGG*

>peptide 3 (36 aa)
MGPQMVADAHSADGLLVLPGTTMKWFSDCGTILEGS*

>peptide 4 (62 aa)
MVLGLRLGLWLWLWWCGFFVEVVEEVMMVMILVEVIKHMLFVEQLPGWWMVDWSWGSICGCR*

Sequence

>CNT30498790
TGCAACTTAAAAAGAACACCAGGATCTTACATCACGAAGTATACTCACTCAAATATGTAAGAAATGTAGCTGTACTTTATTCTGTAAAAACTAGAAAACC
GGGCTTCAAATCACTACAGACCACGCGTATCCAATTTGTAGCATTATTGGCTACTTAGCATCCTTCAACTCAGTGGTTTGCTGGAGGATGGTAGATTGGA
GTCGGAGACTCATAGGTGGGCGTCGGTGAACTGTATGTAGGTGTTGGGGCATGGTACTCGGGCTGCGGCTTGGGCTCTGGCTTTGGCTTTGGTGGTGCGG
GTTTTTTGTGGAAGTGGTCGAGGAAGTGATGATGGTCATGATCCTTGTGGAAGTGATCAAACACATGCTTTTTGTCGAACAGTTGCCTGGCTGGTGGATG
GTAGATTGGAGTTGGGGATCCATATGTGGGTGTCGGTGACCCATACGTGGGAGTCGGGGGGTGATACTCTGGCTGAGGCTTAGGTTCTGGCTTTGGCTTC
GGTGGCACGGGCTTCTTGTGAAAGTGGTCGAGGAAGTGCTTCTTGATGGGCCCACAGATGGTTGCCGACGCACATTCTGCTGACGGCTTGCTTGTCTTGC
CAGGGACAACGATGAAATGGTTCTCGGACTGTGGAACAATCCTGGAAGGCTCCTGACCGGGGCAGGGCATGCCAGCCGCGCTGTGAAGCTGCGCCAGGCA
GTCGGCTCCGTGGAGCTCGGCGGGTAGTGGGATGCTGAAGGCGCCAGAGCCATCAAGCTCACGGACGGCCTTGCTCTCGTAGTCGCCTTTGCTATTCTTG
CACTTGATTGACAC