Detailed information on CNT30498583


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697113Digitaria exilisOryza sativa22.296.5290.48105forward
CNT306938Digitaria exilisZea mays22.2913.2289.52105forward
CNT30353505Digitaria exilisEragrostis tef44.826.3882.94211forward

Expression of CNT30498583

Peptides detected in this lncRNA

>peptide 1 (34 aa)
IKFEERYFTVCRFQELKFWNLKRAINYLSISGTI*

>peptide 2 (42 aa)
MAHSSSDPHTHHQLSPAGKIKRSSHIATGVLTGWASSRRHRR*

>peptide 3 (41 aa)
MLGEILDRTLAGPQLAPNLLQASGMTAPAAPSMAHLAWISS*

>peptide 4 (37 aa)
MTVSRLLPKGSLRCLARFSTGPSPGHSWHQTCCRPRG*

Sequence

>CNT30498583
CATCAAATTTGAAGAACGTTACTTTACAGTGTGCAGATTTCAAGAGTTGAAGTTTTGGAATCTCAAACGAGCGATCAATTACTTAAGTATCTCAGGCACA
ATTTAAATCAGCAGTCTTTTCGGAGATCAGAACGAAATTGTTTCTTCCCCCCTCTTGATAATTTACACTCATGGCACATTCTTCTTCAGACCCTCACACA
CACCACCAGCTCTCCCCTGCCGGTAAAATCAAACGCAGCAGCCACATTGCCACCGGCGTTCTTACAGGCTGGGCGTCCTCTCGGCGGCACCGGAGATGAC
GGTGAGCAGGTTGTTGCCGAAGGGGTCACTGAGATGCTTGGCGAGATTCTCGACCGGACCCTCGCCGGGCCACAGTTGGCACCAAACTTGTTGCAGGCCT
CGGGGATGACGGCACCGGCGGCGCCGAGCATGGCCCACCTGGCGTGGATCAGCTCATAGGCCTGGTACCTG