Detailed information on CNT30498207


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672423Digitaria exilisSetaria viridis34.5636.1194.94178forward
CNT30179357Digitaria exilisSecale cereale33.9818.0486.86175forward
CNT30553525Digitaria exilisOryza glaberrima34.372589.27177forward
CNT30349408Digitaria exilisEragrostis tef36.517.0694.68188forward
CNT30596052Digitaria exilisOryza meridionalis27.3825.8792.91141forward
CNT30101149Digitaria exilisOryza rufipogon34.3732.4889.27177forward

Expression of CNT30498207

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MPSSQAAQLVAPHMTPSLSTLGMALRRFMGCSKLLSPPSLWNMHPTGNGAYDLPQPRLTTSRSSQIT

>peptide 2 (50 aa)
LLFIMLNQQSPQAIRIRKTHKAGKMYNAKIRKTRRQVLKACFHLVSCSAW*

>peptide 3 (42 aa)
MRSLEWKHTLISPIRLVWRLKKQRERRGGRIVDTVAGELDVF*

Sequence

>CNT30498207
ACTTTTATTCATCATGTTGAACCAACAAAGTCCACAAGCCATAAGAATAAGAAAGACACATAAGGCAGGAAAAATGTACAATGCCAAGATAAGGAAGACA
CGAAGACAAGTACTTAAGGCATGCTTCCATCTAGTATCTTGTAGTGCTTGGTAGCCTAATTAGATTGCCTTGATGAGATCATTAGAATGGAAACACACGC
TAATTAGTCCGATCCGCTTGGTGTGGAGATTAAAAAAACAGAGAGAGAGAAGAGGAGGCCGGATTGTGGACACGGTGGCTGGTGAGCTAGATGTGTTCTA
AGTTCTAACTAGATGCCTTCATCCCAGGCAGCCCAGTTGGTGGCGCCGCACATGACTCCCTCGCTGTCGACCCTGGGCATGGCCTTGAGGCGGTTCATGG
GGTGCTCGAAGCTCTTGAGCCCGCCCTCGCTGTGGAACATGCACCCCACCGGGAATGGCGCGTACGACTTGCCGCAGCCGCGCTTGACGACGTCGCGGTC
GTCGCAGATCACCAC