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Detailed information on CNT30498181


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9M374|CRF6_ARATH, E-value = 6e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692625Digitaria exilisOryza sativa6.0444.3990.9199forward
CNT30474096Digitaria exilisSaccharum spontaneum5.6724.4184.9593forward
CNT30101166Digitaria exilisOryza rufipogon6.5925.4190.74108forward
CNT30116449Digitaria exilisOryza nivara4.1522.6798.5368forward

Expression of CNT30498181

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MDREDEERGGGIETLRRSDLNIAEIIHLLPFLSRTES*

>peptide 2 (29 aa)
TVRISVTYTNKQSQSIKEKESRAKTTCTN*

>peptide 3 (51 aa)
GSNFSHVHEQAITEHKRKGKQSENDVHELKNNIASTLHHKIIITEKEHLEF*

>peptide 4 (63 aa)
MFIYLKHNTSHSRRIRSRKEDQRKNRLLLSFAVAVGGSFLSLRAGAPCRVRGRGHPHPAAPGG*

Sequence

>CNT30498181
ACGGTTCGAATTTCAGTCACGTACACGAACAAGCAATCACAGAGCATAAAAGAAAAGGAAAGCAGAGCGAAAACGACGTGCACGAACTGAAGAACAACAT
CGCTTCCACCCTTCATCACAAGATAATAATCACCGAAAAAGAACACCTCGAATTCTGAGGGGGGGATTTCGTGTTAATTCATCATTCACGAACGTCTTGG
ATAATAGATGTTCTCTGCTCTACGAACAGAATGGACAGAGAAGATGAAGAGAGGGGTGGAGGAATTGAAACTCTCAGACGATCTGACCTGAACATTGCAG
AAATCATCCATCTATTGCCATTCTTATCGCGTACAGAATCGTAGTACATGTTTATATATCTCAAGCACAACACAAGTCATTCACGCCGAATCAGGTCAAG
AAAAGAAGACCAAAGAAAAAATCGCCTTCTCCTATCTTTTGCTGTTGCTGTTGGTGGATCCTTCCTATCGCTCAGAGCCGGAGCTCCGTGCAGAGTCCGA
GGCCGTGGTCATCCTCATCCAGCGGCGCCGGGAGGTTGAGGTCGAACGGCGGGCGCGACCGGACCGTGGAGGCGTCGTCGCCGTCGTCCACGACGGAGGC
CGACGAGGCGCAGTCGCTGTGGCAGCCGGCGTCGGGCGTGGCGGCCAGCCGCGGCTTCACCAACCGCCTGGTCCGAGGCACCGCCGTCCCTGCCGCCGCC
GGTGACTGCCTGGCGCCCCCGCGTGGACCGCTGGAGGACTCGACGGTGGAGCTGGAGCTGCACGTGGGCGCGGCCGGCGCCGGCGCGACGAGGCCGGCGA
CGGAGGTCAGCGGGAGACGCCGGGAGAGGGCGGCGGTGGCGGCGGAGGAAGGGAAGTTGGTCCGGGCGAGCGGTCCGCGCAGGGTCCGGGCGGCGACGTC
GTAGGCGCGGGCGGCGGCCTCGGCGGAGTCGAAGGTGCCGAGCCAGACGCGGGCGCGCTTCGCCGGGTCGCGGATCTCCGCCGCGAACCTTCCCCATGGC
CGCTTCCTGACGCCCCTGTACCTCGCCGCCGCCACGGGCACGGCCGCGGTCTCGCACATCATCGTGCTCTGCTCTGATCGTAGCTCGCTCGCTCAATCAG
CTAGCTAGCTAGCTATTCCGATAAAAAAAAAAAGAAGACCTCTCGAAGCGCCGCTGCGCCGCTCGTTGTTGAGGTGAGCTGAAACGCGCGGGTAGCGCGG
GTGGTGGCTGAGCGGAGAAGCGCGGGAAGAGAAGGGTGTGTTCTTGGTCTGGTCTGGCGCCCGTGGTGCGGCGGGGAGAGGCGCGCGGGGGGTAGAAGAA
GGGGGGAGGCGGAGGCGTGGTGGGGGGAGGAGAGGAGACGCGGCTTGGCTAGCTTTGGGCAGCCGCTTCCCACCTTCCCCACTCGCTCTCGCCTCGCCAT
TATACTACATTTTTTTTTCCAATTTGATTTTCTGTCTGCCTCCGTCGTTGCCGAGTTCACTTTGTGCTCCCGCGTTTCGTTCGTTGCGGGGAAGGCAGCG
AGTAACACGTTTGGATTTGTTTTGTTTTGGCATCTCCCTATCATTCCATCGCGTCATTAGCTAGCGGGCTGCTGCTACCCATGACCCATCTCTACTGCTT
CCGATGCGGCCGCTGTGCTGTCCACGTGGAGCGGACTCCG