Detailed information on CNT30497831


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523459Digitaria exilisSetaria italica47.8412.0686.21232forward
CNT30189159Digitaria exilisSecale cereale33.6126.1684.66163forward
CNT30303579Digitaria exilisTriticum aestivum33.6129.7487.12163forward
CNT30225370Digitaria exilisHordeum vulgare29.2822.4385.92142forward
CNT30441948Digitaria exilisAegilops tauschii33.6128.285.28163forward
CNT30255744Digitaria exilisAvena sativa29.4826.6387.41143forward
CNT30468518Digitaria exilisSaccharum spontaneum22.4739.2193.58109forward
CNT30139045Digitaria exilisLolium perenne32.9931.1986.88160forward
CNT30338547Digitaria exilisEragrostis tef40.2138.9287.69195forward
CNT30558037Digitaria exilisPanicum hallii78.5670.388.71381forward

Expression of CNT30497831

Peptides detected in this lncRNA

>peptide 1 (44 aa)
LLSALLAIKVDSVLPLSLHQHSLCSLSPSRVRSTDEGSSCAVQK*

>peptide 2 (38 aa)
MYRRFICILRYQRKRIMPEGYVQSISLLGQTSLLAAHVW

>peptide 3 (29 aa)
PSLCPFGYKSRLGPAPLLAPALSVFPFPF*

Sequence

>CNT30497831
GCCTTCTCTCTGCCCTTTTGGCTATAAAAGTAGACTCGGTCCTGCCCCTCTCCTTGCACCAGCACTCTCTGTGTTCCCTTTCCCCTTCTAGGGTTAGAAG
TACTGATGAGGGTTCAAGCTGTGCTGTGCAGAAGTGAGCTCAGTGCTATGGCATGGAATTAAAGATCTGATCTATATATCCAGGTTTGCATCTGGAGGCA
GCAAGCTAGAGGCGGCAACTACATAACTTGCGATAAACTCGTTGGACCATGGTTGTGCTGATGGTTTTACCGCAAGTTATGCAGTTGCTGCCTCAAGCTT
GCTGCCTCCCTTTGCCAAACCAGAAGGGATAAGATGAAGTCCATTTCTATAGAGATCTTCCATACCCATGTATCGTAGGTTTATATGTATCCTTAGATAT
CAAAGAAAAAGAATTATGCCAGAAGGCTATGTGCAATCTATCAGTTTGTTAGGGCAAACTAGCTTGCTAGCTGCTCATGTATGGT