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Detailed information on CNT30497454


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZC0|UXS1_ARATH, E-value = 1e-74

BLAST vs NONCODE:
NONBNAT004786, E-value = 2e-20

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30703138Digitaria exilisQuercus lobata84.4159.9280.89314forward
CNT30500451Digitaria exilisCoffea canephora40.8614.2581.58152forward
CNT3021362Digitaria exilisCitrullus lanatus48.1227.582.12179forward
CNT30727603Digitaria exilisCorchorus capsularis41.6731.3883.87155forward
CNT3068683Digitaria exilisQuercus suber84.4163.8281.85314forward
CNT30524728Digitaria exilisPhaseolus vulgaris86.8359.8180.19323forward
CNT30504810Digitaria exilisNicotiana attenuata40.0522.8983.22149forward
CNT30636701Digitaria exilisCapsicum annuum40.0536.2584.56149forward
CNT3098150Digitaria exilisSolanum tuberosum29.8422.6585.59111forward
CNT30182233Digitaria exilisSecale cereale10059.8192.74372forward
CNT30222279Digitaria exilisHordeum vulgare80.9199.6794.02301forward
CNT30590847Digitaria exilisMusa acuminata90.3273.5282.74336forward
CNT3084565Digitaria exilisVigna radiata61.0213.4379.74227forward
CNT30510868Digitaria exilisSolanum lycopersicum38.4468.7581.82143forward
CNT30143812Digitaria exilisMedicago truncatula43.2813.0283.85161forward
CNT30246244Digitaria exilisAvena sativa10045.792.47372forward
CNT30457014Digitaria exilisSaccharum spontaneum10048.6993.55372forward
CNT30134072Digitaria exilisLolium perenne10051.2493.01372forward
CNT3066796Digitaria exilisLeersia perrieri10095.6392.47372forward
CNT30653881Digitaria exilisRosa chinensis62.921.9183.76234forward
CNT30338563Digitaria exilisEragrostis tef99.1989.1391.87369forward
CNT30477892Digitaria exilisArabidopsis halleri85.4829.7280.82318forward
CNT30363710Digitaria exilisSorghum bicolor61.2938.8485.09228forward
CNT30595456Digitaria exilisOryza meridionalis99.1964.7492.41369forward
CNT30358465Digitaria exilisLactuca sativa57.2620.4280.28213forward
CNT30424172Digitaria exilisPapaver somniferum38.4420.4985.31143forward
CNT3054595Digitaria exilisAmborella trichopoda39.2570.5382.19146forward
CNT30325711Digitaria exilisAsparagus officinalis69.0980.5685.6257forward
CNT30102778Digitaria exilisOryza rufipogon14.5221.3488.8954forward
CNT30583952Digitaria exilisEchinochloa crusgalli10081.5895.16372forward
CNT30594668Digitaria exilisEragrostis curvula84.1492.8892.33313forward
CNT30336663Digitaria exilisCynara cardunculus43.0134.2684.38160forward
CNT30723923Digitaria exilisLupinus angustifolius37.968.7884.4141forward
CNT3064271Digitaria exilisSelaginella moellendorffii57.839.0979.53215forward

Expression of CNT30497454

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MVDPVDFEEDWLDDIVAEQLEPWVPEVVRNVLFPPSEEIVDHDHAVALLQQPVHEV

>peptide 2 (36 aa)
YRINMPPVSLLLWMLKWITINFTCASQQEPCANSLC*

Sequence

>CNT30497454
CCTATAGGATTAACATGCCCCCAGTAAGTCTCCTTCTGTGGATGCTCAAGTGGATCACCATAAACTTCACTTGTGCTAGTCAACAAGAACCTTGCGCCAA
TTCGCTTTGCTAGACCCAGCATATTCAAGGTTCCCATGACATTTGATATGATCGTCTTGATGGGGTTGTATTTGTAGTGCACGGGCGACGCGGGGCACGC
GAGATGGTAGATCCGGTCGACTTCGAGGAGGATTGGCTCGACGACATCGTGGCGGAGCAGCTCGAACCTTGGGTTCCGGAGGTGGTGCGCAACGTTCTCT
TTCCTCCCAGTGAAGAAATTGTCGACCACGATCACGCTGTCGCCCTGCTCCAGCAGCCGGTCCACGAGGTGG