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Detailed information on CNT30497176


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674125Digitaria exilisSetaria viridis28.5648.0790.59287forward
CNT30521394Digitaria exilisSetaria italica30.058.3790.73302forward
CNT30374052Digitaria exilisArabidopsis thaliana8.2629.4385.5483forward
CNT30193220Digitaria exilisSecale cereale25.5729.0189.49257forward
CNT30474298Digitaria exilisSaccharum spontaneum29.9538.8990.7301forward
CNT30140847Digitaria exilisLolium perenne25.0744.2186.11252forward
CNT3016300Digitaria exilisZea mays22.793789.52229forward
CNT30350542Digitaria exilisEragrostis tef14.4325.9984.14145forward
CNT30368707Digitaria exilisSorghum bicolor22.7929.490.83229forward
CNT30596912Digitaria exilisOryza meridionalis9.2522.286.0293forward
CNT30369646Digitaria exilisOryza glumipatula25.7748.6879.92259forward
CNT30148536Digitaria exilisBrachypodium distachyon8.7641.1290.9188forward
CNT30583436Digitaria exilisEchinochloa crusgalli25.7728.487.26259forward
CNT30115905Digitaria exilisOryza nivara25.7748.4181.08259forward
CNT30557292Digitaria exilisPanicum hallii29.7538.3387.96299forward

Expression of CNT30497176

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MPAAIPFMVMMSVSSSPGAYSLAGLSFSRSARWFSSANSLDSGGCDVTLKLGSLIRFKV*

>peptide 2 (79 aa)
MPGFPLAKTISSRSRFLLSFLMAAWNAPPTPSHTGRWNLVCVQEKIHGIARSDSIPPLGFLFAGLLPMFIFPYSVSGVA*

>peptide 3 (31 aa)
MGSHGATRYHPWASSSLAYFQCSSFRTRSQV*

Sequence

>CNT30497176
CGCTCCAATAGGTGATGTACACCAATTTATAGGAATAGTAAGATAAATTTATTATTATTATTAGAAACATACAAATAGATCGTGGTCTTTATTATTACAT
TGCTTAAGCAGCCATGACGACACCTCACTTGAACATTATTTAAATACTGTATGTAAAAAGTAGGGAAGCTCCAAGCTTAGGGAGCTCCAAGCATATATAA
TTAGACCGAAAACACCTCCAGAAGCTGGGGTTTTCGGCGCTCTGCGGTGAGCGAACCAGACCAGCTGGCATCCTCTAGCCAGTGTTCTGCATGCCGGCGG
CGATACCCTTCATGGTGATGATGAGCGTGTCCTCCAGCCCGGGCGCGTACTCGCTCGCCGGGTTGAGCTTCTCGAGGTCGGCGCGCTGGTTCTCGTCGGC
GAACTCCTTGGACAGCGGCGGCTGCGACGTCACCTTGAAGCTCGGGTCCCTTATCCGTTTCAAGGTGTAGGCCTGCAGCACGTTCAGTGTGGTGATGTAG
GGGTCGCGCAGCCGCAGCCTCTGCTTCAGGTAGGGATCGCCCTCAAGGATTTCCTTGTGCCCAGCAATCTGCACACAAACAATGAGTAGTCAGGAACATG
AATTTCATATAAGGATCCTGTATATTCCTGTGGAATTCGGGAGCTTTCAGTAGTACCTCGAGGAGAAGCTTCTCGGTCTCCACGTACTTGTTCCTCAGCT
GCTCGCCGAAGGGCTTGAGCTCTTCGGCGACGAGCAGGTTGTCGTACAAGCCGGCGATGCCGGGGTTTCCCTTGGCGAAGACCATCTCGAGCAGGTCCAG
GTTCTTGCTGTCCTTCTTGATGGCGGCCTGGAACGCGCCTCCAACGCCGAGCCACACGGGGAGGTGGAACCTCGTCTGCGTCCAGGAGAAGATCCATGGG
ATCGCACGGAGCGACTCGATACCACCCTTGGGCTTCCTCTTCGCTGGCCTACTTCCAATGTTCATCTTTCCGTACTCGGTCTCAGGTGTAGCCTGAGAAT
TGAAC