Detailed information on CNT30496557


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41048|PSBQ1_MAIZE, E-value = 6e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520717Digitaria exilisSetaria italica79.1525.4896.77186forward
CNT30179895Digitaria exilisSecale cereale71.4963.1688.1168forward
CNT30290295Digitaria exilisTriticum aestivum79.5728.8188.24187forward
CNT30385644Digitaria exilisTriticum turgidum79.5723.9489.3187forward
CNT30554363Digitaria exilisOryza glaberrima807.8388.3188forward
CNT30659718Digitaria exilisTriticum dicoccoides79.5727.588.77187forward
CNT304156Digitaria exilisZea mays8046.5392.55188forward
CNT30680164Digitaria exilisTriticum urartu79.5728.7389.3187forward
CNT30362913Digitaria exilisSorghum bicolor75.7463.5789.89178forward
CNT30370617Digitaria exilisOryza glumipatula65.535690.91154forward
CNT30581445Digitaria exilisEchinochloa crusgalli83.8328.4797.46197forward

Expression of CNT30496557

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MTYGHAFLSMSGLRLRMSCADDLALAAASAGGSGCR*

>peptide 2 (71 aa)
MVLKSLPVGCPEAEVVHDVRPRLLVDERLEVEDVLRRRLGPRRGLRRRQRLQVEPLLQGEVEVPGLVRVLGP

Sequence

>CNT30496557
TGTTAACTTACATCGTCGATGGTGCTGAAGAGCTTGCCGGTAGGATGCCCGGAGGCGGAGGTCGTTCATGACGTACGGCCACGCCTTCTTGTCGATGAGC
GGCTTGAGGTTGAGGATGTCCTGCGCCGACGACTTGGCCCTCGCCGCGGCCTCCGCCGGCGGCAGCGGCTGCAGGTAGAACCTCTCCTTCAGGGCGAGGT
CGAAGTCCCTGGCCTGGTCAGAGTTCTCGGTCCCG