« Back to Digitaria exilis search


Detailed information on CNT30496542


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672185Digitaria exilisSetaria viridis19.9840.5993.69222forward
CNT30520324Digitaria exilisSetaria italica34.6558.4286.75385forward
CNT30450016Digitaria exilisSaccharum spontaneum32.9433.1289.62366forward
CNT30680544Digitaria exilisTriticum urartu20.2587.2185.78225forward

Expression of CNT30496542

Peptides detected in this lncRNA

>peptide 1 (46 aa)
EEEALGEHQTACQLISKNMNKGGVVVVYDSTSLHFFFACFSFFSLF*

>peptide 2 (44 aa)
MCVRAHLFLASLCFALDVALPRGREDEGNISCSISWRKPGGFLAA

>peptide 3 (68 aa)
MTRRAAPLTPTCLSACLCCCCCCCWARGDGAATTAMGEPRLTALSTSRSYPGISTGAGLATWWWWSGV*

Sequence

>CNT30496542
GGAGGAAGAGGCACTTGGTGAACATCAGACTGCTTGCCAACTTATATCCAAGAACATGAACAAGGGAGGAGTGGTAGTAGTATATGATTCTACATCACTC
CATTTTTTTTTTGCTTGCTTTTCTTTTTTCTCTCTTTTCTAGAACAGCTAGATCGACCTGACCTGAACTGAACACGAGAAACTACAAGGAGGGAGGAGAG
AATCAGACGCCCTCGGTTGGTCCTCTCCTCTATTACCCTTTTTTCAGTCGTATACACAAAACAAACTAGGCTTGAAGTTACACTAGGCAGCAGCCATCGT
CGATCTTCAGGAGAAGAAGAAGAAAGAAGCAGCAGCTCTAGCGAGGCTGGTGGATGACGCGGCGCGCGGCGCCCCTGACGCCGACGTGCCTGTCCGCGTG
CCTCTGCTGCTGCTGCTGCTGCTGCTGGGCGCGCGGCGACGGCGCGGCGACGACGGCCATGGGGGAGCCGAGGCTGACCGCCCTGAGCACGTCGAGGTCG
TATCCGGGCATCAGCACCGGCGCGGGCTTGGCGACGTGGTGGTGGTGGTCGGGGGTGTAGAAGAGGTCGTCGGTGTCGAGCAGGTCGACGGAATCGTCGG
GGAGCAGCGCGGCGAGGGAGGCTTCGTAGGCGGCCTCGTGGAGCTGGTGCTGGCGGAACCAGTGGTCACGGAACCAGGCTGTGGTCTTGACGAGCTCCCA
CCACTCCGGCGAGTAGTCCTCCACCTGCCGGTACGCCGCCGGGATGAAGAGCGGCGCGTTCGGGTTCAGCGACGACGACGCCATGGCCATAGCGCTCATC
CTCTCTCCTTCCTGGAAGAGCAATTAATTAGAAAGCTGTCAGCTTTCACGGCTCCTCAGCTTCGCCGGAGCTCAGCTTCAGCTCGCCAAGATCAAGACGA
CCACCAGATCCGCAAGGTGGAATCGTTAACGTTGCAGATCTGGAAGAGCAAGCTAGCTAGCCATAGCTTCCCCACATGTGTGTTCGTGCTCACCTTTTCC
TCGCTTCGCTTTGCTTTGCTTTGGACGTTGCCTTGCCGAGAGGCCGAGAGGACGAGGGAAATATCTCGTGCAGTATTTCTTGGCGGAAACCGGGTGGTTT
TCTGGCTGCCG