Detailed information on CNT30495922


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30556231Digitaria exilisPanicum hallii26.1416.8282.58356forward

Expression of CNT30495922

Peptides detected in this lncRNA

>peptide 1 (40 aa)
GLIGQSTARPTLHCRHLLRLKSQASTWPRTQPQTLAPRRN*

>peptide 2 (44 aa)
RSDWTKYCSSHAPLPTPVAFKISGVDVAAYAATNPSPPPQLTTR*

>peptide 3 (53 aa)
MHAITFITMRPQQARVTTIVARLVFSTAEKEAGQRMFDYSCMGMACVQHLSST*

>peptide 4 (47 aa)
MRQELHYLQGSHKINWRIILVAFLQVVQLLPQACCLPLPELQVKQGV*

>peptide 5 (48 aa)
MRAAPQQHVAEAEAGTASGFMPRGQAIRQKLNLKNFTHHSGGLLVQPL*

>peptide 6 (38 aa)
MSRITLLNSQPTSFLGASGLISSNTQWITRKCESKCMP*

>peptide 7 (29 aa)
MTADLPILSQRNSMLIFLYSFIVFVCVDG*

Sequence

>CNT30495922
CGGTCTGATTGGACAAAGTACTGCTCGTCCCACGCTCCACTGCCGACACCTGTTGCGTTTAAAATCTCAGGCGTCGACGTGGCCGCGTACGCAGCCACAA
ACCCTAGCCCCCCGCCGCAATTAACAACCCGCTAATCCCCCAAATCCCACGCTAATCACCCGCTAAGCCGCTCTCTCTCTCCGCCGGAAAGCCAATCCCG
CCGCATCACCCCTCTCGCTTTTCATATCTCCACTTGTGCGGGTTGGGTTCTAGACTCGTCGATTCGGTTTCGATCCTTCTAGACATTTCGCCGCCCCCGC
TATAAAAGCCGGCACCTCCGAGGCCATCGATCGGCACATCAGCGCTCGCACACAGCTCATTGGCGGGCCAGATGGAACTCGCGGGGGATTCCAAGCTATC
GGCGAATTGCATGTGGCGGCACCAAGCATGAGGCAGGAACTGCATTACTTGCAAGGAAGTCACAAAATCAACTGGAGGATAATACTTGTGGCTTTCTTGC
AAGTTGTGCAGTTGTTGCCTCAAGCTTGCTGCCTCCCTTTGCCAGAACTACAAGTGAAACAAGGAGTATAGTCAGTTTCTGAATTGTGAATTTTGGAAAA
GCAATCTGGAATATATGAATATGATGCAAAAACTAATCAATACTCACTATCTGCACATGCTTTGCATTTTGGTACTTCATAAATTGTCAAGAGGCTTCTA
GCTGGTCATTATGCTGGAGATATGAGTAGAATAACATTGTTGAATAGTCAACCAACCTCATTTCTAGGGGCTTCTGGCTTGATATCGTCTAACACGCAGT
GGATCACCAGAAAGTGTGAAAGCAAATGCATGCCATAACCTTCACTGTCAAATGCATGCCATAACCTTCATTACCATGCGGCCCCAGCAAGCCCGGGTGA
CAACAATCGTTGCGCGGCTGGTTTTTTCTACGGCAGAAAAGGAGGCTGGACAGAGAATGTTCGACTACAGCTGCATGGGCATGGCATGCGTGCAGCACCT
CAGCAGCACGTAGCAGAAGCAGAGGCGGGCACAGCCAGTGGCTTCATGCCACGTGGTCAAGCAATAAGGCAGAAGTTAAACCTCAAGAATTTCACTCATC
ACTCTGGAGGTTTATTAGTACAACCTTTGTAAAAGCTCTTGATTGAAGCATGACAGCTGATTTGCCTATACTGTCGCAGAGAAATTCTATGCTCATTTTT
CTTTATTCATTTATCGTTTTTGTCTGCGTGGATGGATAAAGACTAGTTAAGCTTATGAAAAACAGCAGATTACTGTCAGGACTGCAAGCATGGGCAGTAG
GGGGCTTTCCAATCTAGGCCCCCTAGAATGTCAAACAGAACTCAGGCCCGGTTTAGTTTCCA