Detailed information on CNT30495845


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520129Digitaria exilisSetaria italica90.82101.6586.82554forward
CNT30139784Digitaria exilisLolium perenne18.6921.0789.47114forward
CNT30369722Digitaria exilisOryza glumipatula19.0222.8386.21116forward
CNT30100580Digitaria exilisOryza rufipogon20.9828.3886.72128forward
CNT30575237Digitaria exilisOryza barthii19.0226.6787.07116forward
CNT30584006Digitaria exilisEchinochloa crusgalli34.7541.9894.81212forward

Expression of CNT30495845

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MFTSIRLVAFALLLSGGRFRLIAAFLLLSFTKEG

>peptide 2 (80 aa)
MSKGSGAAALTGGGMGTAAETGMVIGRIGTLTGEGTAGTTGSGILAEGIKATAMALDMGTSTTGFAGAAADMEVATAGAG*

Sequence

>CNT30495845
CCATCTCCTCCAGCTCTGCAAGTAGTGGATCCCATTCGTTAACGCCACACAGATCATCCACAGACTGCTCCAGGTTGTAATTGTTCTGCCTAAGAATTTC
CTTGTTCAGATCAATCTGCCTGAAGCCCATTTCCTCGAGCTCCCTAAGCAGCTTCTCCTCATTGTGACCATCTATGTCAAAAGGCTCAGGTGCTGCAGCA
CTTACAGGTGGAGGCATGGGCACAGCAGCAGAAACAGGCATGGTTATAGGCAGGATAGGCACATTAACAGGTGAAGGTACAGCGGGCACAACAGGCTCAG
GCATACTAGCAGAAGGCATAAAAGCAACAGCCATGGCACTGGACATGGGAACATCCACTACAGGGTTTGCCGGAGCTGCTGCAGACATGGAGGTAGCAAC
AGCAGGAGCAGGCTGAGATTTCTTGGGCTCTGGAACATTAATCGGATAGAAGTGGAACTCTTTAGTGCGCTTGGCATGTGCACCAAGGGCAGAGTCAACA
GGCTCAATGTTCACATCAATTAGGTTAGTTGCGTTTGCACTATTGCTTTCTGGAGGCAGATTCAGATTAATAGCAGCATTCCTGTTATTGTCATTTACAA
AGGAAGGATC