Detailed information on CNT30495763


BLAST search results

BLAST vs Swiss-Prot:
sp|M1BJF6|JOKA2_SOLTU, E-value = 5e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670619Digitaria exilisSetaria viridis28.0651.0590.82316forward
CNT30520083Digitaria exilisSetaria italica28.0653.6590.82316forward
CNT30397652Digitaria exilisTriticum turgidum8.5320.393.7596forward
CNT30364692Digitaria exilisSorghum bicolor13.4125.6890.73151forward
CNT30556352Digitaria exilisPanicum hallii58.8892.2187.03663forward

Expression of CNT30495763

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MCTGTRSSLVLLLPGDEIHHSSLDASPVLREQLLVHLSIIKTLKSTQVQNHVVLVLWESYRINRGTYHLLQLCK*

>peptide 2 (70 aa)
QTTQFTYKYRHPSRSMHRSICSHISVTQGRRPVHTSSTRPNSSPTRHQTVETHHTHADRSGINTKLISKL*

>peptide 3 (92 aa)
MSKGSGAAALTGGGMGTAVRIGAEAVAGAGAETGTVVGRIGTLTDEGTAGTTGSGILAEGIKAAAMALDMGTSTTGFAGAAADMEVATAGAG*

>peptide 4 (35 aa)
MFTSIRLVVFALLLSGGRFRLIAAFPLLSFTKEGSS

>peptide 5 (61 aa)
RPHNLLINIDIQVGPCIVVYVRIYQSHKAEGQSIQAVHAQIVHRHDTKLSKHTTRTQIEVA*

Sequence

>CNT30495763
CAGACCACACAATTTACTTATAAATATAGACATCCAAGTAGGTCCATGCATCGTAGTATATGTTCGCATATATCAGTCACACAAGGCAGAAGGCCAGTCC
ATACAAGCAGTACACGCCCAAATAGTTCACCGACACGACACCAAACTGTCGAAACACACCACACGCACGCAGATAGAAGTGGCATAAACACTAAGTTGAT
AAGCAAGCTCTGAGACGTGATAGAGCTGCACCATAATGGTACAGCAGTCTCATTGTTTACACTAGATTAGATAACTATGTGCACGGGCACACGATCTTCA
CTTGTCCTTCTTCTCCCTGGCGATGAGATCCATCACAGCTCGCTTGATGCTTCCCCCGTTCTTCGCGAGCAGCTCCTTGTTCACCTCAGTATCATCAAAA
CCCTGAAAAGCACCCAAGTTCAGAACCATGTCGTACTAGTTCTATGGGAGTCATACAGAATTAACAGAGGCACGTACCATCTCCTCCAGCTCTGCAAGTA
GTGGATCCCATTCGTTAACGCCACACAGATCATCCACAGACTGCTCCAGGTTGTAATTGTTCTGCCTAAGAATTTCTTTGTTCAGATCAATCTGCCTGAA
GCCCATTTCCTCGAGCTCCCTAAGCAGCTTCTCCTCGTTGTGACCATCTATGTCAAAAGGCTCAGGTGCTGCAGCACTTACAGGTGGAGGCATGGGCACA
GCAGTAAGGATCGGGGCAGAGGCAGTTGCAGGAGCAGGAGCAGAAACAGGCACAGTTGTTGGCAGGATAGGCACATTAACAGATGAAGGTACAGCGGGCA
CAACAGGCTCAGGCATACTAGCAGAAGGCATAAAAGCAGCAGCCATGGCACTGGACATGGGAACATCCACTACAGGGTTTGCCGGAGCTGCTGCAGACAT
GGAGGTAGCAACAGCAGGAGCAGGCTGAGATTTCTTGGGCTCTGGAACATTAATCGGATAGAAGTGGAACTCTTTAGTGCGCTTGGCATGTGCACCAAGG
GCAGAGTCAACAGGCTCAATGTTCACATCAATTAGGTTAGTTGTGTTTGCACTATTGCTTTCTGGAGGCAGATTCAGATTAATAGCAGCATTCCCGTTAT
TGTCATTTACAAAGGAAGGATCTTCA