Detailed information on CNT30493928


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671810Olea europaeaSetaria viridis13.3438.4684.2195forward
CNT30535942Olea europaeaEucalyptus grandis19.3829.6183.33138forward
CNT30516841Olea europaeaJuglans regia21.6319.0185.06154forward
CNT30500911Olea europaeaCoffea canephora16.5722.7887.29118forward
CNT30277964Olea europaeaChenopodium quinoa22.1926.3882.28158forward
CNT30628805Olea europaeaVigna unguiculata20.2226.9786.11144forward
CNT3097013Olea europaeaSolanum tuberosum23.637.8481.55168forward
CNT30135602Olea europaeaLolium perenne18.8223.9383.58134forward
CNT30592895Olea europaeaEragrostis curvula15.4521.1984.55110forward

Expression of CNT30493928

Peptides detected in this lncRNA

>peptide 1 (43 aa)
YHSNAQAFSLRTSSSSSGVKSFLILKVLRISSGVFPFIMSATV*

>peptide 2 (61 aa)
SLKRPSIFPANFLFLLRGEVILNIESLADFLRSLSFYHVGHSLTCEVEQTLYVQIVCCLKT*

>peptide 3 (32 aa)
MKICEQDYKNKRRTCFQPFPKKVTLCISSSDF*

Sequence

>CNT30493928
TATCACTCAAACGCCCAAGCATTTTCCCTGCGAACTTCCTCTTCCTCCTCCGGGGTGAAGTCATTCTTAATATTGAAAGTCTTGCGGATTTCCTCCGGAG
TCTTTCCTTTTATCATGTCGGCCACAGTCTGACATGTGAGGTCGAGCAGACTCTTTATGTTCAGATAGTTTGCTGCCTGAAAACGTGATGTCACTAGTTA
GTAGTAGCTAGAGAAAAGAACTGTGAATCATACAGAAAAAGCATTAAAAACACAAGAATGCCAACAGAGAAATGAATAGATTATCTTCTATGTAAAAACA
AACAGATGAAAATTTGTGAGCAAGATTACAAGAACAAAAGAAGAACATGTTTTCAACCCTTCCCAAAGAAAGTTACATTATGCATCTCCAGTTCTGACTT
TTGATGCAGGAAGATTGCTGTTATCTTCAAACCACCCGATCCAAAGTAAAATAAAAATTTTAACAGAACAAAAATAGTTTGATTCCAGTTACTCTACCCA
AAGGCTTTATATTATAAGCCTTCAAATAAAAATAAGAATATATAATAATTAAAAGAAGCCCCACCTCATACCAAAATTTCACCAATACTACAAACATTAT
TCAAGCAAACAAGCCGTCCGTATTGATCTACAACCCAGAAAAAAGGGAAAGAAATGGATAACCCTTAACTACTGCTTTATATAGACAAACTAACAACAGA
ACAGAGATCCAT