Detailed information on CNT3049296


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6PL11|SKP1_ORYSJ, E-value = 1e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317831Cucumis sativusCorylus avellana43.721.2785.58104forward
CNT30516841Cucumis sativusJuglans regia42.4412.4788.12101forward
CNT30500911Cucumis sativusCoffea canephora38.6617.7685.8792forward
CNT30171771Cucumis sativusTrifolium pratense42.4427.0183.17101forward
CNT30686076Cucumis sativusTriticum urartu36.5530.9683.9187forward
CNT30348724Cucumis sativusEragrostis tef37.3910.1984.2789forward
CNT30112966Cucumis sativusFicus carica35.7112.6984.7185forward

Expression of CNT3049296

Peptides detected in this lncRNA

>peptide 1 (33 aa)
AVLDNLGQDLAVDIRKGDSTIGAVVFDHVLDRL*

>peptide 2 (48 aa)
LQYSITLDKILLLTLGRGIPLSAQSSSIMCLIVCDFPARRHGGVFGIR*

Sequence

>CNT3049296
TTGCAGTACTCGATAACCTTGGACAAGATCTTGCTGTTGACATTAGGAAGGGGGATTCCACTATCGGCGCAGTCGTCTTCGATCATGTGCTTGATCGTTT
GTGATTTTCCGGCCAGAAGACATGGTGGCGTGTTTGGGATTCGGTGAGGTTCGAAAACACAGAGAGAAGCGTTTTGCGATTTGAGAAAGAGAGAAACCAA
ATATGTATGAAACTGACCACAAAAATATGGCTTTTAAG