Detailed information on CNT3048746


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317401Cucumis sativusCorylus avellana32.113.1187.1470forward
CNT30547444Cucumis sativusIpomoea triloba36.246.4184.8179forward
CNT30514447Cucumis sativusJuglans regia38.073.0186.7583forward
CNT30702190Cucumis sativusQuercus lobata32.112.191.4370forward
CNT3020018Cucumis sativusCitrullus lanatus1005.6190.37218forward
CNT30379963Cucumis sativusManihot esculenta38.9941.8794.1285forward
CNT30163770Cucumis sativusPistacia vera32.572.4691.5571reverse complement
CNT30564605Cucumis sativusActinidia chinensis37.615.5489.0282forward
CNT30573760Cucumis sativusVitis vinifera37.612.8986.5982forward
CNT3026058Cucumis sativusPopulus trichocarpa32.116.0185.7170reverse complement
CNT3038501Cucumis sativusCucumis melo1006.5999.08218forward

Expression of CNT3048746

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MDPTAPIAISIMLLYNIFKADRPVACISQELHHLFLLDPCLD*

Sequence

>CNT3048746
GGGTTTGAGGCAGAGCTCCTTGAAGTCCAATAGAGGTTTATGCCAGGTTGATTGAGCTGCTAAGCTATGGATCCCACAGCCCCTATTGCTATATCTATCA
TGTTGTTGTATAATATCTTTAAAGCTGATAGGCCTGTGGCTTGCATATCTCAGGAGCTTCATCACCTGTTTTTGTTAGATCCTTGTTTGGATTGAAGGGA
GCTCTACATCTTCTCTCT