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Detailed information on CNT30484609


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1ACM1|PSBA_CHAVU, E-value = 2e-33

BLAST vs NONCODE:
NONMEST005600, E-value = 1e-21

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692810Chara brauniiOryza sativa33.0810.2883.85130forward
CNT30530127Chara brauniiEucalyptus grandis27.2333.5483.18107forward
CNT30378684Chara brauniiArabidopsis thaliana44.7817.3281.82176forward
CNT30300827Chara brauniiTriticum aestivum31.310.8285.37123forward
CNT3089382Chara brauniiVigna radiata52.4245.1881.55206forward
CNT30540534Chara brauniiBrassica napus44.7815.3381.25176forward
CNT30145113Chara brauniiMedicago truncatula44.7853.6681.82176forward
CNT30441777Chara brauniiAegilops tauschii31.321.8584.55123forward
CNT3059907Chara brauniiArabidopsis lyrata30.2823.3882.35119forward
CNT3018289Chara brauniiZea mays33.085.0185.38130forward
CNT3067750Chara brauniiLeersia perrieri33.0848.6983.85130forward
CNT30655381Chara brauniiRosa chinensis43.7732.1581.98172forward
CNT30627894Chara brauniiDaucus carota52.4220.280.58206forward
CNT30684652Chara brauniiTriticum urartu31.315.9185.37123forward
CNT30147990Chara brauniiBrachypodium distachyon33.088.5984.62130forward

Expression of CNT30484609

Peptides detected in this lncRNA

>peptide 1 (47 aa)
YKTRVGTREIFSSIEKTSLNSLWDKGQSREVSSLNSTSILLRNQKFL*

>peptide 2 (30 aa)
MPSICTGGAGIKAMINTEVAVKRVRIINTPN

Sequence

>CNT30484609
GGTATAAGACAAGAGTCGGTACACGTGAAATTTTCTCTAGCATAGAGAAAACTTCACTCAATTCTCTGTGGGACAAGGGGCAGTCCAGAGAAGTAAGTTC
ATTGAATTCAACTTCTATCTTGTTGAGAAATCAAAAATTCCTTTGAATTCTCAACAAGAGAGAAGTTAAATTCAATGAACTCAAGTAAAGCAGCTTCCCA
TATAGGATAAAAATGTAAGCCAATAGTTGCTGATATAGGAACAATAGCACCAGAGATTATATTATTTCCATAAAGCAAAGAACCAAAAACAAGTTCACGA
ATGCCATCGATATGTACTGGAGGAGCTGGAATAAAAGCAATGATAAATACAGAAGTTGCAGTCAAAAGAGTAAGAATCATTAATACACCAAAC