Detailed information on CNT3048154


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678839Prunus dulcisSetaria viridis85.0365.1195.52892forward
CNT30519050Prunus dulcisJuglans regia99.6292.8997.221045forward
CNT30373968Prunus dulcisArabidopsis thaliana66.5445.2197.28698forward
CNT30619379Prunus dulcisSesamum indicum74.3610095.9780forward
CNT30200729Prunus dulcisPisum sativum99.4342.8997.221043forward
CNT30285964Prunus dulcisTriticum aestivum75.7968.1296.23795forward
CNT30224448Prunus dulcisHordeum vulgare75.5100.1394.07792forward
CNT30544510Prunus dulcisBrassica napus99.6265.3196.841045forward
CNT30239033Prunus dulcisBrassica oleracea99.6276.9596.751045forward
CNT30444212Prunus dulcisAegilops tauschii85.6169.0295.66898forward
CNT30261854Prunus dulcisBrassica rapa83.682.2796.92877forward
CNT3010382Prunus dulcisZea mays90.66101.8292.64951reverse complement
CNT30206557Prunus dulcisHelianthus annuus78.3638.1196.47822forward
CNT30365254Prunus dulcisSorghum bicolor85.1398.6794.06893forward
CNT30413997Prunus dulcisPapaver somniferum77.8897.8496.08817forward
CNT3036408Prunus dulcisCucumis melo99.2498.4998.171041forward

Expression of CNT3048154

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MMRRQHDGCAIRRVIMNHQSNGQSPRQPFI*

>peptide 2 (44 aa)
MKFQRLPGPVGQGYRLVEYISVARVRPRTSKGITDLLLPQTSLA*

>peptide 3 (44 aa)
MHPFQKPGFVARISSRITTVIRVVDTIKQTITDLMSHSQLHSLN*

>peptide 4 (41 aa)
ETLLRLLLPLNDKVQWTSRDVAGSEPPTPPRSEHFTGPFNR*

>peptide 5 (43 aa)
MIRFSGLLATSRAANHPRRRDPNTSPDHSIGRSDGRCVQRAGT*

Sequence

>CNT3048154
GAAACCTTGTTACGACTTCTCCTTCCTCTAAATGATAAGGTTCAGTGGACTTCTCGCGACGTCGCGGGCAGCGAACCACCCACGCCGCCGCGATCCGAAC
ACTTCACCGGACCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTC
CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACA
TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCGGCCATAGTCCCTCTAAGAAG
CTGGCCGCGGAGGGATCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCC
ATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGAGATTGGGTAATTTG
CGCCCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGCCACCCGTCACCACCATGGTAGGCCA
CTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGATGCGCCGCCAGCACGATGGCTGTGCGATCCGTCGAGTTATCATGAATCATCAGAGCAA
CGGGCAGAGCCCGCGCCAGCCTTTTATCTAATAAATGCATCCCTTCCAGAAGCCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGA
GTAGTAGATACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGCAGCTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCTTAATCTTT
GAGACAAGCATATGACTACTGGCAGGATCAACCAGGTAGCATTCCTTTC