Detailed information on CNT30479177


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LFH0|AB37G_ARATH, E-value = 8e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30543852Arabidopsis halleriBrassica napus50.3412.8992150forward
CNT30237091Arabidopsis halleriBrassica oleracea50.3431.7192.67150forward
CNT30310460Arabidopsis halleriCamelina sativa20.8110.895.1662forward
CNT3061076Arabidopsis halleriArabidopsis lyrata88.5934.1198.11264forward
CNT3081344Arabidopsis halleriBrassica juncea57.387.193.57171forward
CNT30263179Arabidopsis halleriBrassica rapa50.349.5492150forward
CNT30612830Arabidopsis halleriArabis alpina47.6510.9496.48142forward

Expression of CNT30479177

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MYFHEKKESRIHTFQCTRRNIDWLIKLPVRLPTP*

Sequence

>CNT30479177
AGGTTAGATTCAGAATAAGCTTCAGCGATTAGAAAGTGTCAGAAGAATGTACTTTCATGAAAAGAAAGAATCAAGAATACATACATTTCAATGCACTCGA
AGGAACATTGATTGGTTGATAAAACTACCTGTTCGGCTACCAACTCCCTGACAACGAGCTGAGAAATCAACTGTCTCCCTCACTGTCATCTCTGCAATGT
GCAGATCATATTGACTTATGTACGCCGAAGTTTTCTGAGGAACAAACTCGTCCAGTCTGTGTCCATTCTAGGAGGACCAAGCAACAGTGTTAACCTGC