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Detailed information on CNT30474298


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674125Saccharum spontaneumSetaria viridis37.2148.2488.89288forward
CNT30521394Saccharum spontaneumSetaria italica39.418.4588.85305forward
CNT30193220Saccharum spontaneumSecale cereale35.5331.0488.73275forward
CNT30140847Saccharum spontaneumLolium perenne31.9143.3387.04247forward
CNT3016288Saccharum spontaneumZea mays59.4388.9788.7460forward
CNT30350532Saccharum spontaneumEragrostis tef21.7114.0686.31168forward
CNT30368707Saccharum spontaneumSorghum bicolor68.8668.4295.12533forward
CNT30583440Saccharum spontaneumEchinochloa crusgalli29.7244.0691.3230forward
CNT30497176Saccharum spontaneumDigitaria exilis38.8929.9590.7301forward
CNT30557292Saccharum spontaneumPanicum hallii38.7638.4690.33300forward

Expression of CNT30474298

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLSLTDSTGNIYCQALDFRNCLAQSKEDG*

>peptide 2 (59 aa)
MPAAIPFMVRMSVSSRPGGYSLAGFSFTSPAGLFSSANSLDSGGCGVTLKLGSLIRFSV*

Sequence

>CNT30474298
TATTACCAATCAAGTAGATGCTATCTCTCACTGATTCAACCGGTAACATATATTGCCAGGCATTGGATTTCAGAAATTGTTTAGCACAATCAAAAGAGGA
TGGTTGAACTAGCATCATGGTAAAAAAGTCCATCCAATGGGCTGGGATATAAAGTGACATTTTCCCTGCCAGATACATTAATACAAAATAGTAAATTTGT
AGATTGTATGATGTTCATTATTACAATATGTTTAAGATGCCAAGATTTTTCCACTTGGACTTCACAACAAGAGTGAAAATATAAAGAGGCCAAAGCCGAG
GAAATTACATAAACATAAACATAAACATAGTGAAAACAGAAGGTGTCAGTTTTCAGCATTTCCATCCAAAACTGACAAAACGCCACCATCCGGAAGCTGA
TTATTATTGCCGTGCAGTACTCTGCAGGTGAGTGAAGGGAAGCGGCCTAGCCGGTGTTCTGCATGCCGGCGGCGATACCCTTCATGGTGAGGATGAGCGT
GTCTTCCAGGCCGGGCGGGTACTCGCTCGCCGGGTTCAGCTTCACCAGTCCGGCGGGCTTGTTCTCGTCGGCGAACTCCTTGGACAGCGGCGGCTGCGGC
GTCACCTTGAAGCTGGGGTCCCTTATCCGCTTCAGCGTGTAGGCCTGCAACACGTTCAGGGTGGTGATGTAGGGATTGCGCAGCCGCAGCCCCTGCTTCA
AGTAAGGATCGCCTTCAAGAATATCCTTGTGCCCAGCGATCTGCACAAAACAGGACAGTACATACGTATTGTCA