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Detailed information on CNT30472864


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XQ45|AKR3_ORYSJ, E-value = 4e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692870Saccharum spontaneumOryza sativa22.6424.181.34134forward
CNT30676378Saccharum spontaneumSetaria viridis41.0572.7583.13243forward
CNT30316651Saccharum spontaneumCorylus avellana27.733.3379.88164forward
CNT30192307Saccharum spontaneumSecale cereale54.7339.5181.48324forward
CNT30586652Saccharum spontaneumMusa acuminata26.1817.3680.65155forward
CNT30133477Saccharum spontaneumLolium perenne22.9767.3386.76136forward
CNT30101473Saccharum spontaneumOryza rufipogon14.0223.5184.3483forward
CNT30603989Saccharum spontaneumOryza punctata22.6461.4782.09134forward

Expression of CNT30472864

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MNIRYFFSLTTSNKETTYIAEHTYSCFHDDNRGVSEFFQVLFI*

>peptide 2 (39 aa)
MMTIEGSQNSSKCYSFDDVDHLGHYLQQYRTQVQPSHLV*

>peptide 3 (56 aa)
MMSITLDITCSSIGLKFSLLILCELHRQCSQILVEILNFCCSWYRANILSLMVNPR*

Sequence

>CNT30472864
CTTTGCCATCTAAATTCATCACATCATTCAACATAGGACATATTAGCAACGAAGCATATAATACACATCCATGAATTTAGATCAACGCACAAGCACATTT
GAAGGACAACCCCTTTAAAGTAAACATGAGCATTTCCTGATGTCTTCATAAGATAAAGGGGCATTAATTAGCCTCTGTATCTAGATATGAACATACGATA
TTTCTTCTCTCTTACTACATCCAACAAGGAGACAACATACATAGCTGAACATACCTACTCATGTTTCCATGATGACAATAGAGGGGTCTCAGAATTCTTC
CAAGTGTTATTCATTTGATGATGTCGATCACCTTGGACATTACTTGCAGCAGTATAGGACTCAAGTTCAGCCTTCTCATCTTGTGTGAGCTTCACAGACA
GTGCTCCCAAATTCTGGTTGAAATTCTCAATTTTTGTTGTTCCTGGTATAGGGCAAACATCTTGTCCTTGATGGTGAACCCACGCTAATGCAAGTTGTGA
TGGTGTGCAACCCTTTCTTTTTGCCAGTTCACTAATACACTCGAATACCTTGACATTCTTGTCAAGGTTCTCTGGTTGAAATCTAGGCAGTT