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Detailed information on CNT30471557


BLAST search results

BLAST vs Swiss-Prot:
sp|A5H8G4|PER1_MAIZE, E-value = 3e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676209Saccharum spontaneumSetaria viridis20.3322.8488.89135forward
CNT30552443Saccharum spontaneumOryza glaberrima33.7329.8379.46224forward
CNT30363300Saccharum spontaneumSorghum bicolor33.2846.5383.71221forward

Expression of CNT30471557

Peptides detected in this lncRNA

>peptide 1 (32 aa)
HEKKYLAQFYFILIIKRQTPQLNEHRMMYNRV*

>peptide 2 (67 aa)
MTLQLRLISPCVPVSTSILPILTMDLANLLFHFASLRTKESTSAFIVALVSSAASDVKRPRLLVRPT*

Sequence

>CNT30471557
CACGAAAAAAAGTATTTGGCACAGTTTTATTTCATCCTCATAATCAAACGACAAACGCCACAGTTAAATGAACACCGCATGATGTACAACAGAGTGTGAT
CACCTCCTTTTTCTTCAGTTTTCTAGGTTATTGTGCTGTCTCCGTGTTCATGTAGCAAGATAGTTATACAGCTAATTCGCTCATTACTTATTGCAATATC
ACATCCCACACCAAACACACACTGCGCGCACATGTACTGACAACCGCTATGCTTAGCTTGCAGCCACTCCAGTGAATCCTGAAGAATCTGACTGACTGCC
GAGAACATCGGTGACACTTGAAGGGTTGATGACCCTGCAGTTGCGCCTGATCTCGCCCTGCGTCCCGGTGAGCACCTCGATCTTACCCATCTTGACCATG
GACTTGGCAAACTTGCTCTTCCATTTCGCCTCGCTGCGCACGAAGGAGTCGACCAGCGCCTTCATCGTCGCGTTGGTGAGCAGTGCCGCGTCCGACGTGA
AGAGGCCGAGGTTATTGGTGAGGCCGACGTAGTACTTGTTGTCGAACTTTTCCGGCGTGATGAGGTCCATGAACGTCGTCGTGTTCGGGAAGAACTGGCT
GCTGTTCGACGGGCAGATGCTCTTGAGGAGAAACGCGTAGGCTTTGCTCAGCGCCGGATCAATC