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Detailed information on CNT30469790


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6YZA6|GL85_ORYSJ, E-value = 2e-113

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30297939Saccharum spontaneumTriticum aestivum34.6595.681.57369forward
CNT30223652Saccharum spontaneumHordeum vulgare25.5437.7883.82272forward
CNT30401458Saccharum spontaneumTriticum turgidum25.5468.6983.46272forward
CNT30688822Saccharum spontaneumTriticum urartu52.7770.1680.25562forward
CNT30102982Saccharum spontaneumOryza rufipogon14.375183.01153forward

Expression of CNT30469790

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MRANEMPRVLSPGNCMTLIKVTLDPTLFVSLGLSRFAALKKSSAFTAMGSLQTNPFTFTAYTKAMENRYTEIRKH*

>peptide 2 (32 aa)
MIYLVVVVLPELSLKPINCPLLHLEGLGQDII*

>peptide 3 (45 aa)
MFVVTNDYYLILNLLQESSCGRGRSGGVWGRRVGLRDWTRQRWEA*

>peptide 4 (32 aa)
MSPWGNTNTSPLLRTLVNSLLPLSVLEVTNPT*

>peptide 5 (60 aa)
LHSHTNYSITHTMPKHDLFSCGCSPRTELEANQLSPFAPGRPWPRHHLRSVALIQRLHWQ*

Sequence

>CNT30469790
CTCTACATTCCCATACAAATTATTCCATAACTCATACAATGCCCAAACATGATTTATTTAGTTGTGGTTGTTCTCCCAGAACTGAGCTTGAAGCCAATCA
ATTGTCCCCTTTTGCACCTGGAAGGCCTTGGCCAAGACATCATCTGAGATCGGTGGCTTTGATCCAAAGACTGCATTGGCAATAGTAATAGCCCCAGGGT
TCTGGCTACTTAGTGCCGCGATCGCGACTGCTGGCTTGTCATGGACCGGATTGAATTGGAAGTGGATGAGCCCTTGGGGGAATACAAACACGTCACCCTT
GTTGAGAACCTTGGTGAATAGCTTGTTACCGTTGTCTGTATTGGAGGTGACAAATCCAACATAGAGTGTACCCTCGAGCACGGTGAGAATCTCCGTGGCA
CGTGGGTGGGTGTGTGGTGGATTCTGACCTAATGGTGCGTAGTCAATGCGAGCCAACGAGATGCCCAGGGTGTTGAGTCCAGGCAACTGCATGACATTGA
TCAAAGTGACATTGGATCCGACCTTGTTTGTGTCCCTAGGCTTGTCAAGGTTTGCTGCCTTGAAAAAGTCATCAGCGTTCACGGCCATGGGGTCCTTGCA
AACAAATCCATTCACCTTCACTGCATATACAAAGGCGATGGAAAATAGGTACACAGAGATCAGAAAACATTAGGACATACACAAAAAAAATATAATGTTT
GTTGTGACAAATGATTATTATTTGATCCTCAATTTACTACAAGAAAGCTCGTGCGGCAGGGGAAGAAGCGGTGGCGTGTGGGGGAGGAGGGTGGGGTTGC
GCGACTGGACGCGACAGCGATGGGAGGCGTGAGCGTGATCGTGCGACGGCCCGATACGTGCCGTTTTCTTTTCTAGGCCGGAGGAGGCGATTTTTATTTT
ACACCGGTTTTGGCTCAATCCGTATATATGTAAAACTAGTGTGCTCACTAGCCATCCTAACAACTAATTCTTTTGCTTGCATCGGTAAAATTGACAGGCC
TGTAATTTATAGGTGTTTTGGACAAAATACCGGGCTTCCAAACATGCCCTTAAAGTGAGTGCATG