« Back to Saccharum spontaneum search


Detailed information on CNT30467578


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6YZA6|GL85_ORYSJ, E-value = 1e-115

BLAST vs NONCODE:
NONORUT002037, E-value = 3e-30

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30223440Saccharum spontaneumHordeum vulgare41.8566.3483.82272forward
CNT30240671Saccharum spontaneumAvena sativa63.5452.8882.32413forward
CNT30664982Saccharum spontaneumTriticum dicoccoides86.7767.0681.21564forward
CNT30688823Saccharum spontaneumTriticum urartu86.7754.9280.5564forward
CNT30573048Saccharum spontaneumVitis vinifera18.772581.97122forward

Expression of CNT30467578

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MRANEMPRVLSPGNCMTLIKVTLDPTLFVSLGLSRFAALKKSSAFTAMGSLQTNPFT

>peptide 2 (57 aa)
MHINVSSYNEVSLNLLSSGCSPRIELGANQLFPFAPGRPWPRHHLRSVVLIQRLRWQ*

>peptide 3 (47 aa)
MATAGLSWIGLNWKCMSPWGNTNTSPLLRTLANSLLPLSVLEVTNPT*

Sequence

>CNT30467578
CCGGCTGTAGCATGTCGTAACTGAATACACACAGGAGTATGCAAAATGCATATAAACGTGTCTTCGTACAATGAAGTGAGTCTCAATTTACTTAGTAGTG
GTTGTTCTCCCAGAATTGAGCTTGGAGCCAATCAATTGTTCCCTTTTGCACCTGGAAGGCCTTGGCCAAGACATCATCTGAGATCGGTGGTTTTGATCCA
AAGACTGCGTTGGCAATAGTAATAGCCCCAGGGTTCTGGCTGCTTAGTGCAGCGATGGCCACAGCCGGCTTGTCATGGATCGGGTTGAATTGGAAGTGTA
TGAGCCCTTGGGGGAATACAAACACGTCACCCTTGTTGAGAACCTTGGCGAATAGCTTGTTACCGTTGTCTGTATTGGAGGTGACAAATCCAACATAGAG
TGTACCCTCGAGCACGGTGAGAATCTCCGTGGCACGTGGGTGGGTGTGTGGCGGATTCTGACCTAATGGTGCATAGTCAATGCGAGCCAACGAGATGCCC
AGGGTGTTGAGTCCAGGCAACTGCATGACATTGATCAAAGTGACATTGGATCCGACCTTGTTTGTGTCCCTAGGTTTGTCAAGGTTTGCTGCCTTGAAAA
AGTCATCAGCGTTCACGGCCATGGGGTCCTTGCAAACAAATCCATTCACC