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Detailed information on CNT30467554


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6YZY5|GL811_ORYSJ, E-value = 2e-81

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30130807Saccharum spontaneumLolium perenne31.7418.3983.66153forward

Expression of CNT30467554

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MATAGLSWIGLNWKCMSPWGNTNTSPLLRTLANSLLPLSVLEVTNPT*

>peptide 2 (57 aa)
MHINVSSYNEVSLNLLSSGCSPRIELGANQLFPFAPGRPWPRHHLRSVVLIQRLRWQ*

Sequence

>CNT30467554
CCGGCTGTAGCATGTCGTAACTGAATACACACAGGAGTATGCAAAATGCATATAAACGTGTCTTCGTACAATGAAGTGAGTCTCAATTTACTTAGTAGTG
GTTGTTCTCCCAGAATTGAGCTTGGAGCCAATCAATTGTTCCCTTTTGCACCTGGAAGGCCTTGGCCAAGACATCATCTGAGATCGGTGGTTTTGATCCA
AAGACTGCGTTGGCAATAGTAATAGCCCCAGGGTTCTGGCTGCTTAGTGCAGCGATGGCCACAGCCGGCTTGTCATGGATCGGGTTGAATTGGAAGTGTA
TGAGCCCTTGGGGGAATACAAACACGTCACCCTTGTTGAGAACCTTGGCGAATAGCTTGTTACCGTTGTCTGTATTGGAGGTGACAAATCCAACGTAGAG
TGTACCCTCAAGCACGGTGAGAATCTCTGTTGCACGTGGGTGGGTGTGTGGCGGATTCTGACCTAATGGTGCGTAGTCAATG