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Detailed information on CNT30467515


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09020|PR4_PHAVU, E-value = 2e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533654Saccharum spontaneumEucalyptus grandis18.6127.9683.94137forward
CNT30180424Saccharum spontaneumSecale cereale20.3823.1888150forward
CNT30221624Saccharum spontaneumHordeum vulgare21.0622.8687.1155forward
CNT30386243Saccharum spontaneumTriticum turgidum20.3822.1688150forward
CNT30249706Saccharum spontaneumAvena sativa20.5223.390.07151forward
CNT30135597Saccharum spontaneumLolium perenne20.5229.2188.08151forward
CNT30346089Saccharum spontaneumEragrostis tef20.5226.8794.7151forward
CNT30597257Saccharum spontaneumOryza meridionalis20.5230.2691.39151forward
CNT30371492Saccharum spontaneumOryza glumipatula20.5228.1290.73151forward
CNT30108688Saccharum spontaneumOryza longistaminata20.5226.9291.39151forward
CNT30104475Saccharum spontaneumOryza rufipogon20.5226.8791.39151forward
CNT30578401Saccharum spontaneumOryza barthii20.5227.0191.39151forward
CNT30118085Saccharum spontaneumOryza nivara20.5228.2891.39151forward

Expression of CNT30467515

Peptides detected in this lncRNA

>peptide 1 (36 aa)
VATKLDTAHALSLARILPHAHPSAIAHKRSQERTKP*

>peptide 2 (46 aa)
MIYDVNSPLFRSFLSQKGGADKRKMEEHKPKEQRPKASENKPVMNE*

>peptide 3 (49 aa)
GRNKTRHGARPLSCPHSSARTPIGHRPQALAGEDETLAFAAAAAAEKPR*

Sequence

>CNT30467515
AGGTCGCAACAAAACTAGACACGGCGCACGCCCTCTCTCTTGCCCGCATTCTTCCGCACGCACACCCATCGGCCATCGCCCACAAGCGCTCGCAGGAGAG
GACGAAACCCTAGCTTTTGCGGCGGCGGCGGCGGCGGAGAAGCCAAGATGATCTACGACGTGAACTCTCCCCTCTTCCGCTCCTTCCTCAGCCAGAAGGG
CGGCGCCGACAAGAGGAAAATGGAGGAGCATAAACCAAAGGAGCAGAGGCCCAAGGCCAGCGAGAACAAACCTGTGATGAATGAATGAACATCTCTAGAA
ACTGCGTTCAATGCGCAACCAAATTCAATGTCTGTTTGCTCTGTTTAGCATAAACCAAAGCTTCCAATAATCTTAGTGGTATCTTAGTTCCCCCTCATAT
TATTTATTGCTCTGCTTGAACATGGCAACAGTGCAACGGACATGAAACTTGAACTACCTATGAGACTATTATCAATTTGAGACACCCATGATTGATAACT
TTTGAGTAGCTCTCATGTTACTGCCGTTGTGGTTGGTACAAAATTGTGGGGTGCCACCATGTTTCATGCTTGCTTTTCCACCTTCCCTTCCTGTAGCCTA
GTATCTACTGGAGGTAGGGAAGTGGAGAGTAGTTCATAGGATGGATCTTCGGCCGTTGCATGGCATGTAAAACCATAGACCATACTTTTGTGCTGGTTGC
ATGGAATCATGTCTGATTTGCTTTTGGTTCCCCAAA