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Detailed information on CNT30466905


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6YZA6|GL85_ORYSJ, E-value = 7e-111

BLAST vs NONCODE:
NONORUT002037, E-value = 3e-27

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30240637Saccharum spontaneumAvena sativa53.2692.2981.06359forward
CNT307812Saccharum spontaneumZea mays84.1266.9489.07567forward

Expression of CNT30466905

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MIYLAVVVLPELSLKPINCPLLHLEGLGQDII*

>peptide 2 (48 aa)
MPKHDLFSCGCSPRTELEANQLSPFAPGRPWPRHHLRSVALIQRLCWQ*

>peptide 3 (59 aa)
MRANEMPRVLSPGNCMTLIKVTLDPTLLFMVSLGWSSFAALKKSSAFTAMGSLQTNPFTF

>peptide 4 (32 aa)
MSPWGNTNTSPLLRTLANSLLPLSVLEVTNPT*

Sequence

>CNT30466905
CATAGAAATAATGAATACATACAGTAGTATGTGAAGTGTAAATAAAGCTCTACATTCCCATACAAATTATTCCAGAACTCATACAATGCCCAAACATGAT
TTATTTAGCTGTGGTTGTTCTCCCAGAACTGAGCTTGAAGCCAATCAATTGTCCCCTTTTGCACCTGGAAGGCCTTGGCCAAGACATCATCTGAGATCGG
TGGCTTTGATCCAAAGACTGTGTTGGCAATAGTAATAGCCCCAGGGTTCTGGCTACTTAGTGCCGCCATCGCGACTGCTGGCTTGTCATGGACCGGATTG
AATTGGAAGTGGATGAGCCCTTGGGGGAATACAAACACATCACCCTTGTTGAGAACCTTGGCGAATAGCTTGTTACCGTTGTCTGTGTTGGAGGTGACAA
ATCCAACATAGAGTGTACCCTCAAGCACGGTGAGAATCTCTGTTGCACGTGGGTGGGTGTGTGGCAGATTTTGACCTAATGGTGCGTAGTCAATGCGAGC
CAACGAGATGCCCAGGGTGTTGAGTCCAGGCAACTGCATGACATTGATCAAAGTAACGTTAGATCCGACCTTGCTCTTCATGGTATCCCTAGGCTGGTCA
AGTTTTGCTGCCTTGAAGAAGTCATCTGCATTCACAGCCATGGGGTCCTTGCAAACAAATCCATTCACCTTCAC