Detailed information on CNT3046025


BLAST search results

BLAST vs Swiss-Prot:
sp|P05993|PAPA5_CARPA, E-value = 2e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376792Prunus dulcisArabidopsis thaliana14.4536.4285.25122forward
CNT3070872Prunus dulcisQuercus suber27.2530.9185.22230forward
CNT30588616Prunus dulcisMusa acuminata11.6140.1685.7198forward
CNT30143899Prunus dulcisMedicago truncatula11.6148.5182.6598forward
CNT30311982Prunus dulcisCamelina sativa10.1923.590.786forward
CNT30599767Prunus dulcisFraxinus excelsior14.8130.2786.4125forward
CNT30653768Prunus dulcisRosa chinensis19.0835.3891.3161forward
CNT30714701Prunus dulcisMalus domestica golden53.5530.989.38452forward
CNT30704623Prunus dulcisPrunus avium69.6725.0497.96588forward

Expression of CNT3046025

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MLQQQLRPWSLHRRYYGPCRFCRIPSLPSSLPMSSL*

>peptide 2 (68 aa)
MTLHQHMFAAICSSSRETTLKLATFAAILLLSNLQLPRSVPVYGYSSSFISPPALSVYSKALKKRPDF*

Sequence

>CNT3046025
CCAAGAATTATAAAGTACATGGGTGGTGCTATGTTTAGTTTTATGTTTTGCGAGGCTGACAGCTGACAGTGTCAACAACAATTGGAGTTGCCCAAATAAA
TGTCTCCGAACTTGTATATACATTACACACAGATATTCCAACTGCAATTATAAGTTGGGGTTGAAGCCTACTGTGGGTTGGTCTCAACAGATGCTGCAGC
AACAGTTGAGACCATGGAGTCTACACCGCAGATATTACGGCCCTTGCAGATTTTGTAGAATCCCTTCTCTCCCCAGTTCTCTCCCCATGAGTTCTTTATG
ATCCAGTATGGCTTCTCCTTCATTCTGATGGGAGAATAGCCAGCTGCACCATAACCCACGAGCAACACCCCATGATCCAATCTCTTTGAGCAAATGTAGG
GGCATGACACTCCACCAACATATGTTTGCAGCAATTTGTTCTTCATCAAGGGAGACAACACTGAAATTGGCAACCTTTGCTGCAATTTTGCTTTTGTCAA
ATTTGCAGCTTCCGCGATCAGTACCAGTGTATGGATATTCTTCTTCCTTCATTAGTCCACCAGCTTTGAGTGTATACTCAAAGGCACTCAAAAAAAGACC
TGATTTTTAACGGCGGTGACAGCTCCACGATCCCTCCAATCAAAATCCTCAGGCAGATTCTCGGTCGGAAGAATCGGAGCCTTGGTGGCATCGGAAGGGA
GCCTCAGCCCTCTGAGTCCGAGTTGACTCTTTCGGAACTCGGCCGGGGTCATATCGGAGAACCGAGTCACGCCGTGTTGAGCCGACGGATCGAGCCTCTG
AGAGAGATAGCGATCCATCTTTACAGAGACCGATTGGTAGCTTT