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Detailed information on CNT30459409


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691571Saccharum spontaneumOryza sativa39.555.5991.43140forward
CNT30190309Saccharum spontaneumSecale cereale27.976.0590.9199forward
CNT30304673Saccharum spontaneumTriticum aestivum40.1112.1286.62142forward
CNT30226134Saccharum spontaneumHordeum vulgare40.1112.0285.21142forward
CNT30395440Saccharum spontaneumTriticum turgidum20.063.8195.7771forward
CNT30552492Saccharum spontaneumOryza glaberrima39.556.4890.71140forward
CNT30443932Saccharum spontaneumAegilops tauschii40.1110.0285.92142forward
CNT30253313Saccharum spontaneumAvena sativa20.621.6595.8973forward
CNT30669134Saccharum spontaneumTriticum dicoccoides40.1115.5486.62142forward
CNT30139217Saccharum spontaneumLolium perenne28.534.0192.08101forward
CNT309471Saccharum spontaneumZea mays41.8110.7998.65148forward
CNT30688313Saccharum spontaneumTriticum urartu40.1115.0985.92142forward
CNT30595788Saccharum spontaneumOryza meridionalis37.0110.8290.08131forward
CNT30369516Saccharum spontaneumOryza glumipatula39.555.6590.71140forward
CNT30575434Saccharum spontaneumOryza barthii39.554.5490.71140forward
CNT30495872Saccharum spontaneumDigitaria exilis39.838.4195.74141forward
CNT30603626Saccharum spontaneumOryza punctata39.555.5790.71140forward
CNT30556231Saccharum spontaneumPanicum hallii51.138.5593.92181forward

Expression of CNT30459409

Peptides detected in this lncRNA

>peptide 1 (94 aa)
STDLPCRLIVSIHFSSSSTFCCWPVCVLHMVAPSMRQELHYLQESHKINCRIILVAFLQVVQLLPQACCLPLPELLVKQEVLSVSELQNISVEK*

Sequence

>CNT30459409
GTAGCACTGATTTACCTTGTCGTTTGATTGTCAGCATTCATTTCTCAAGCAGTTCAACATTTTGTTGCTGGCCGGTCTGCGTATTGCATATGGTGGCACC
AAGCATGAGGCAGGAACTGCATTACTTGCAAGAAAGTCACAAAATCAATTGCAGGATCATACTTGTGGCTTTCTTGCAAGTTGTGCAGTTGTTGCCTCAA
GCTTGCTGCCTCCCTTTGCCAGAGCTATTGGTAAAACAGGAAGTACTGTCAGTTTCTGAGCTACAAAATATAAGTGTAGAAAAATAATTTAGAAATGTAA
GCATAGTATACTAGTACATTGCTAAAGATAAAATCAATACTCAATAACTTCCAC