« Back to Saccharum spontaneum search


Detailed information on CNT30458068


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690716Saccharum spontaneumOryza sativa34.258.3989.6125forward
CNT30675373Saccharum spontaneumSetaria viridis36.4432.9291.73133forward

Expression of CNT30458068

Peptides detected in this lncRNA

>peptide 1 (55 aa)
METGATHLISYNSCMYTVVVTYVGVYLLIIMQGQGSGQKMVVGWLHISSPTDHNG*

>peptide 2 (44 aa)
KKITWNRCILFMWRHDLHSGGRPRCPLMLHLAPENRTWKQEPHT*

Sequence

>CNT30458068
TAAAAAAATCACATGGAACAGATGCATTTTATTCATGTGGAGGCATGACTTACATTCAGGAGGGCGACCTAGATGTCCCCTAATGCTTCATCTAGCTCCT
GAAAATCGAACATGGAAACAGGAGCCACACACTTGATATCTTACAACTCCTGTATGTACACCGTGGTCGTGACATATGTAGGAGTATATCTACTTATTAT
TATGCAGGGACAGGGCTCAGGCCAGAAGATGGTTGTAGGCTGGCTGCATATCTCCTCGCCCACAGATCATAATGGATGATCTCCTCCAGTGACGGGCTTG
TTACCAGCTCGTTCCGATGCGCGTCACATGTGAGCTCCACCACCTTGAATATGTCCAGGTAGCTA