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Detailed information on CNT30457661


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7G1L2|RAP26_ARATH, E-value = 8e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522945Saccharum spontaneumSetaria italica36.2173.1489.58403forward
CNT30721242Saccharum spontaneumTriticum spelta25.3430.4582.98282forward
CNT30364010Saccharum spontaneumSorghum bicolor27.8548.995.48310forward

Expression of CNT30457661

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MTQETEHSHYNFTTKITSLRPLMCCSRRRNHLGTSRLNCPGKKPKLIPLPSTGPIYQTNNPNTY*

>peptide 2 (43 aa)
MKKPAQAARGGGASRPRSSGRRRGRLRRPHRRCRRCQATASCR*

>peptide 3 (74 aa)
MPRPRSQPGNSGKTSLMSSRSRSMSSSSSPKSPRRRSCSSSRQKAASETSSASSPARKSIGSMSGSCRPRRRSW*

Sequence

>CNT30457661
GCGATGCACACATCTATCACGAAACTTAATAGTAATAGCTCAATGACTTGTCCACTATAATGTCTTGACAAGCATTACCAAATGACACAGGAAACAGAAC
ACAGCCACTATAACTTTACTACCAAAATTACCTCTCTCCGGCCGCTAATGTGCTGTTCGAGAAGAAGAAATCACTTGGGCACGAGCAGATTGAATTGCCC
GGGGAAAAAACCCAAGCTAATCCCCCTTCCAAGCACAGGCCCCATTTATCAAACCAACAACCCTAACACATATTAAGCTCACTCCTTAATTCACACGCAG
AAATCGACGGTTTGCAGGAAGTCATCCATGCCGCGGCCGAGGTCGCAGCCAGGTAACTCCGGGAAGACGTCGTTGATGTCGTCGAGGTCGAGGTCAATGT
CCAGCTCCTCATCCCCGAAGTCCCCAAGAAGGAGGTCCTGTTCGTCGTCCAGGCAGAAGGCCGCGTCGGAGACGTCCAGCGCGTCCAGCCCGGCGCGGAA
GTCCATCGGGTCGATGTCGGGCAGCTGCAGGCCGCGCAGAAGGTCCTGGTAGAACTCTGGGTCGTCCGGCACCTGCGCGGATTCAGTGGACGGCAGCGGC
AGGACGACGGGTGGTGTTGGCGTCGCGACCGGCTCTGGAGACTGCGGGTTCGACGCTGCTGCCTTGGTGGATTCGAGCACGGACGACGGCGACGGGTGCG
CGAATGGAGCAGTCGAGGTGGACGACGAAGAGGACGCCGTCGGAGTGGCGCTTGCCGAAGTAGCTGATGAAGAAGCCGGCACAGGCTGCCCGCGGCGGCG
GCGCTTCTCGTCCGCGAAGCTCCGGGAGGCGGAGAGGTAGGCTGCGGAGGCCTCACCGGCGGTGTCGAAGGTGCCAAGCCACTGCCTCTTGCCGGTGAAC
GGGTTGCGGATCTCCGCCGCCCACTTGCCCCACTTGCGGAGCCTCACGCCGCGGTAGCTCTCCGGCGCGCCGCCGCTGGTGCACGCGGCGACAGTGGCCG
CCGGAAGGACCGGCTTGGCTGGGGCCTTGCCGATGAACGCCTCAAAAGAGAAGCGCTTGGTATTTGCTGCAGGGCCCGTAGGGTCGCCGGCCTCTTCGTC
GTCGGAGTCCGAG