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Detailed information on CNT30457159


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ZBP3|H2B2_ORYSJ, E-value = 3e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30379403Saccharum spontaneumManihot esculenta13.9120.6484.48116forward
CNT30632073Saccharum spontaneumVigna unguiculata23.7426.3383.33198forward
CNT30163372Saccharum spontaneumPistacia vera13.9120.1483.62116forward
CNT30240625Saccharum spontaneumAvena sativa52.7659.2291.59440forward
CNT30606042Saccharum spontaneumGossypium raimondii16.7945.984.29140forward
CNT30359864Saccharum spontaneumLactuca sativa15.8331.8884.85132forward
CNT3052765Saccharum spontaneumAmborella trichopoda14.2723.4389.08119forward
CNT30149313Saccharum spontaneumBrachypodium distachyon15.2336.3996.06127forward
CNT30574682Saccharum spontaneumOryza barthii43.7653.3687.4365forward

Expression of CNT30457159

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSLMKEFMMDMALEEMPMSGWTCFSTLKM*

>peptide 2 (63 aa)
MTNSIPKASAVHINSCRIPTTHRSSIDFKFQLATTTATTNTTRQTESQLPTPPSSYYHQPKMR*

Sequence

>CNT30457159
GTATAGTAGTGCATGTATAATTATCAGTTCAATGCCAAGCATATGACAGTTACACGTTAAGAGCATCAAACCGTTACAGAAATCGAATGTAGAACAAGCA
GCACGACTATTCCAGATCCATGACAAACAGCATTCCAAAAGCATCAGCAGTTCACATTAATTCTTGCCGCATCCCAACTACACACAGATCATCCATCGAT
TTCAAGTTCCAACTTGCAACTACTACTGCTACCACTAACACTACCAGACAGACTGAGTCACAACTACCAACGCCACCCAGTAGCTACTACCACCAACCTA
AGATGAGGTGAACTTGGTCACAGCCTTCGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGCACCGAGGTCTGGATCTCCCTG
GAGGTGATGGTGGGCTTCTTGTTGTAGCGGGCGAGCTTGGCGGCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGG
CCTTGGAGGAGATGCCGATGTCGGGGTGGACCTGCTTCAGCACCTTGAAGATGTAGATCTTGTAGGTCTCCACAGACTTCTTGGCCCTCTTCTTGCCCTT
CTTGTCGCCGCCCTCCTTGCCGGCCGACTTGCCCGCCGGGAGGCGCTTCTCCGCCTTGGGCTTCTTCCCCGCTGGGGCCTTCTCGGCCGCGGGCTCCTCC
TCCGCGGGCTTCTTCGCCGCCGGCTTCTTCTCCGCCTTAGGCGCCATCGATGCGGCTTGCTGTTGCGTGAGGCTACAGGGAACGGGGGGATTCGCTCACT
CTGTCGGTTTGAGGACGGGGAATTTCGATTGCTG