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Detailed information on CNT30453977


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41048|PSBQ1_MAIZE, E-value = 2e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694735Saccharum spontaneumOryza sativa81.0830.390.42240forward
CNT30671743Saccharum spontaneumSetaria viridis34.1247.4295.05101forward
CNT30520717Saccharum spontaneumSetaria italica59.4624.1192.61176forward
CNT30179895Saccharum spontaneumSecale cereale56.7663.1685.71168forward
CNT30290255Saccharum spontaneumTriticum aestivum86.1536.5986.27255forward
CNT30385644Saccharum spontaneumTriticum turgidum68.2425.8688.12202forward
CNT30554363Saccharum spontaneumOryza glaberrima68.928.588.73204forward
CNT30659718Saccharum spontaneumTriticum dicoccoides68.923087.75204forward
CNT304156Saccharum spontaneumZea mays67.2349.2697.49199forward
CNT30651943Saccharum spontaneumRosa chinensis40.220.5581.51119forward
CNT30680063Saccharum spontaneumTriticum urartu96.6240.9287.41286forward
CNT30351417Saccharum spontaneumEragrostis tef39.8654.8894.07118forward
CNT30362913Saccharum spontaneumSorghum bicolor59.863.2198.31177forward
CNT30370617Saccharum spontaneumOryza glumipatula56.7661.0991.07168forward
CNT30148624Saccharum spontaneumBrachypodium distachyon68.9248.5787.75204forward
CNT30581445Saccharum spontaneumEchinochloa crusgalli68.9229.4894.12204forward
CNT30496379Saccharum spontaneumDigitaria exilis78.7253.9494.85233forward
CNT30117138Saccharum spontaneumOryza nivara53.7213.2291.82159forward

Expression of CNT30453977

Peptides detected in this lncRNA

>peptide 1 (30 aa)
SSMVLKSLPVSSLRLFFSSLGLEAMTVLRS*

>peptide 2 (97 aa)
IVDGAEELAGELLEALLLLLGLGSDDGLEVIAQVGGPEAEVVLDVRPRLLVDERLEVDDVLRRRLHPRRRLRRRQRLQVEPILQGEAEVPRLVRVFSP

Sequence

>CNT30453977
ATCGTCGATGGTGCTGAAGAGCTTGCCGGTGAGCTCCTTGAGGCTCTTCTTCTCCTCCTTGGGCTTGGAAGCGATGACGGTCTTGAGGTCATAGCGCAGG
TAGGAGGCCCGGAGGCGGAGGTCGTTCTGGACGTACGGCCACGCCTTCTTGTCGATGAGCGGCTTGAGGTTGATGATGTCCTGCGCCGACGTCTTCACCC
TCGCCGCCGCCTCCGCCGGCGGCAGCGGCTGCAGGTAGAACCGATCCTTCAAGGGGAGGCCGAAGTCCCTCGCCTGGTCAGAGTTTTCAGTCCCCG