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Detailed information on CNT30452884


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674956Saccharum spontaneumSetaria viridis14.126.8894.1986forward
CNT30520559Saccharum spontaneumSetaria italica67.8730.4988.89414forward
CNT30295560Saccharum spontaneumTriticum aestivum8.3621.3494.1251forward
CNT30554727Saccharum spontaneumOryza glaberrima32.6226.1288.94199forward
CNT30363020Saccharum spontaneumSorghum bicolor21.3115.6499.23130forward
CNT30596713Saccharum spontaneumOryza meridionalis32.9536.6186.57201forward
CNT30370891Saccharum spontaneumOryza glumipatula34.7522.9286.79212forward
CNT30103385Saccharum spontaneumOryza rufipogon56.7256.4485.55346forward
CNT30580658Saccharum spontaneumEchinochloa crusgalli44.5930.793.01272forward
CNT30496500Saccharum spontaneumDigitaria exilis44.7514.6392.67273forward

Expression of CNT30452884

Peptides detected in this lncRNA

>peptide 1 (45 aa)
RLRSRSSRRQQQRRRTSRRGHHGCPRWRSPRGPGKGWGRSTWTAP*

>peptide 2 (70 aa)
ASGAVVAAASSSGGGRAVGVTTGARVGVARGGRVRVGVVVPGRLLDGDADVEAAVGAARGALEAEVARAA*

Sequence

>CNT30452884
CCGCCTCCGGAGCCGTAGTAGCCGCCGCCAGCAGCAGCGGCGGCGGACGAGCCGTAGGGGTCACCACGGGTGCCCGCGTTGGCGTAGCCCGCGGGGGCCG
GGTAAGGGTTGGGGTCGTAGTACCTGGACGGCTCCTTGACGGCGACGCGGACGTCGAGGCGGCCGTGGGGGCGGCCCGAGGGGCGCTTGAGGCGGAGGTT
GCGCGAGCGGCTTGACGCCCTCGGCGGCGTTGGCGTGCACGACGTCGATGTAGAGGACGGCGTCGTCGAGGCGGGAGGAGGGCGGGAGCGGGACCAGGAG
CTTCTCGTCCCACGCGGGGTTCTCGCCGTTGTCGAGGTCGACGCGGGTGGAGCACCTGGCGCCGGAGTCGATCCACACCACGGCGTACGGCTTGAGGTCG
CCGTTGCGCCAGTTGACGTTCTTCAGGTCCCGGGCCGAGCCCACGGTCACCTCCACCTCGTAGCGGGAGCCCATCGCTGCTTGCGCCCGAGCGGGACGGA
TCACGTCACGTCTCGCAGGGGAAGGAAGGATGGAAGGGGAAGCTTTTGCTTTTGCGGTGAGTGGCGACTGCGCGAACTGGAGCAACACGAGGAGGACGGC
GACCCGTATA