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Detailed information on CNT30450127


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 5e-55

BLAST vs NONCODE:
NONGMAT001327, E-value = 9e-55

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696576Saccharum spontaneumOryza sativa24.5536.3695.12164forward
CNT30703567Saccharum spontaneumQuercus lobata16.4721.7890110forward
CNT30252143Saccharum spontaneumAvena sativa39.6725.6396.23265forward
CNT3082467Saccharum spontaneumBrassica juncea29.0427.0682.99194forward
CNT30229571Saccharum spontaneumAnanas comosus21.5634.9590.97144forward
CNT30596905Saccharum spontaneumOryza meridionalis24.5526.9795.73164forward
CNT30577582Saccharum spontaneumOryza barthii24.5525.7995.73164forward
CNT30496126Saccharum spontaneumDigitaria exilis39.8239.1294.36266forward

Expression of CNT30450127

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MITSISSWQSIITRNSSSETYCRITSTNAATAATLRPTATERNIPTVPLLRRGA*

>peptide 2 (41 aa)
TDKLTHCAVLVRSAQKNLVPERVIVTTISQENNHQDTTYAA*

>peptide 3 (73 aa)
MSPEMRFTPPLRASLRIAGLVMPWMLSRSTFRCRFAPPLPRPLPPLPRPDIAAAAAAASHGPSSLTDFFCCWEE

Sequence

>CNT30450127
CACAGACAAACTGACGCACTGCGCAGTACTAGTTCGAAGTGCTCAAAAGAACTTGGTTCCTGAGCGAGTTATTGTTACTACCATTTCTCAGGAAAACAAT
CACCAAGACACAACATACGCAGCATGATTACTAGCATTTCTTCATGGCAGAGCATCATTACTCGCAATTCTTCATCAGAAACATACTGTAGGATTACATC
CACGAACGCAGCAACTGCAGCAACACTACGACCCACAGCGACAGAGAGAAATATCCCAACCGTTCCCCTACTACGAAGAGGCGCCTAGCCTCCGAAGCCG
TAGAGGGTGCGGCCCTGGCGCTTGAGCGCGTAGACGACGTCCATGGCGGTGACGGTCTTGCGGCGCGCGTGCTCGGTGTAGGTGACGGCGTCGCGGATGA
CGTTCTCGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGATGAGCCCCGAGATGCGCTTCACGCCGCCCCTCCGCGCCAGCCTCCGGATCGCCGG
CTTGGTGATGCCCTGGATGTTGTCGCGAAGCACCTTCCGGTGCCGCTTCGCGCCACCCTTGCCCAGACCCTTGCCTCCCTTGCCGCGCCCCGACATCGCC
GCCGCCGCCGCCGCCGCCTCGCACGGGCCCTCTTCTCTGACGGACTTTTTCTGCTGTTGGGAGGAGCT