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Detailed information on CNT30448397


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XCK6|CHI8_ORYSJ, E-value = 2e-131

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30178778Saccharum spontaneumSecale cereale8.6939.5386.47170forward
CNT30283870Saccharum spontaneumTriticum aestivum8.6945.3388.82170forward
CNT30131347Saccharum spontaneumLolium perenne9.349.4680.22182forward
CNT30231239Saccharum spontaneumAnanas comosus10.2727.4281.09201forward
CNT30679711Saccharum spontaneumTriticum urartu8.6933.288.24170forward
CNT30341126Saccharum spontaneumEragrostis tef6.2355.9686.07122forward
CNT30103592Saccharum spontaneumOryza rufipogon14.3692.7483.99281forward

Expression of CNT30448397

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MDKTVKNGRNCYHFHIYDFYFHFHFPQNAIKPRLIRS*

>peptide 2 (35 aa)
MFSINQKQKCRCTNRFHNWIISLYCIIIKIKICMV*

>peptide 3 (33 aa)
MLSSPIEEIAATSFLLRCYFQFYSSFSFHFWLG*

>peptide 4 (34 aa)
MFMMTCFRLIRNRNADVLIDFITGSSAFIVLLLK*

>peptide 5 (30 aa)
MAVLKETTGSDDTRSGLLTRSWPIASPACC*

>peptide 6 (70 aa)
MIDATSAAATPSSSAAAAAAHATTANLLAMLAIATSLPAVWASCGHSTSTRTCLRCRFFDRAAAGTWKGC*

Sequence

>CNT30448397
TGTACTTTTTATATCTGGCTCACGAGCTTAATGAGCCGAGCCAAGCTGGCTTTCTAGCTCGTTAAGATAACGAGCCGAGCCGAGCTAGCTTGTTATCTTA
ACGAGCCAGAACGAGCCGAGCCGAGCTGGCTCATTATCGAGCCTTAGCCCCACTGCTCCAGTTCTCCTTCTCGCGACCCGAATTCAAGGAGGAACGGACG
GCTCCAGTTCTCCTAACCCCGTAACCCTGATAGGAGGTAGCCAGAGATGTTGAGCTCGCCAATAGAGGAGATCGCCGCTACTTCTTTTCTCCTTCGTTGT
TACTTCCAATTTTATTCCAGTTTTTCATTTCATTTTTGGCTCGGATGATTTTGATAGTCGGTAGTTTTACCAAATGGTAAATGGATAAAACCGTAAAAAA
TGGTAGAAACTGTTATCATTTTCATATTTATGATTTCTATTTCCATTTTCATTTTCCTCAAAATGCGATAAAACCTCGATTAATCCGTTCCTGATCAGCA
TTATGGGGAAAAGGAAGATTCAAAACAAATAGCAGGAGAGGTGGTGGCCCAAGTAGCTTTGTAAAAGTCCGGCCCAGGACTAGATGTAACGTGCATAAGG
AAAGGCCTTCTCAATTGGAAGCGGCGGTGCAAAAGGAGCATCAAGCAAGGCCGTCAAGGATAGAGAGCTGGGCCGTGGTAGAGGTTACAGATACTAAAAT
TCCACTGTGTCATTTCAATCTAAACTGCAGATAGGTGCCATTTCATCCTGTGACTACCATTGTTTTGGGTGCATTCGTTTTGTTGCCTCTTTAACGGTGT
GCTAAAATTATATATTGTCTGCCCCGTCCGCACAGACTCCAAACTAACAGGTTTTTGCAGTTGTCTGCGCTTGCCAAAATTTCCATGTTCATGATGACAT
GTTTTCGATTAATCAGAAACAGAAATGCCGATGTACTAATAGATTTCATAACTGGATCATCAGCCTTTATTGTATTATTATTAAAATAAAAATATGTATG
GTATAGGCCACTTATTCGTAGGTCACGTCACACACAGATTATTATATACTCGCAACAAACAGTCGTAAACAGCAGTTGATCAGAAGTGCTGCTGGGAGTA
GCAGTCGAGATTGTCGCCGTAGCCGACGCCGAACATGTCGCAGTAGCGCTGGTAGTACCCGATGCGGTCGACGTTGGCGTCGTTGGGCCCCACGCCGCAC
TCGATCCCGCCGTTGATGATGTTGGTGATGGCGCCGTAGCCGGGCACCCGCCCCGCCGCCGCGTCGGCGTCCGACGGCGCCCAGTTCCCCAGGATCACGT
CGTGGCACGACGGCTTGGGCGACTGCGCCGTCATCCAGAACCAGATGGCCGTCTTGAAGGAGACCACCGGGTCCGACGACACCAGGTCCGGGTTGCTCAC
CAGGTCCTGGCCTATCGCGTCCCCGGCTTGCTGTTGAATTGGTCCCCGTCCATAGTAGGGAGGACTGGTCGCCTTGTTGATCTCCTCCTTGAAGCAGTAA
CCCCACTGGAACTGGTCGGCAGCACCTCTAGTGCCACCTGTGGTCTCGTGGGAGGTCTGGCCGAAGAAGGCGGCGAGCTCGCGCCTGTTGAGCTCGTCGC
TGCTGCCGCTGGTGCCGAAGCCCGGGAAGAAGTTGGCGGCCTGGATGAAGGCGTCGTAGGTGTAGAAGCCGTTGGCGGGGCAGAGCGAGTTGTCGCGGTT
GGGCAGCATTTGGTTGTACACGTCCTGCGTGATGATCGACGCCACGTCCGCCGCCGCCACGCCGAGCAGCAGCGCCGCCGCCGCGGCAGCGCACGCCACG
ACCGCAAACCTCCTCGCCATGCTAGCTATTGCTACCTCTCTACCAGCTGTGTGGGCTAGCTGTGGCCACAGCACGTCTACTCGTACTTGCTTGCGCTGTC
GATTCTTCGATCGCGCTGCTGCTGGAACTTGGAAGGGTTGTTAGCTGCTGCCTGGAT