Detailed information on CNT30447626


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370040Saccharum spontaneumOryza glumipatula6.1622.490.24123forward
CNT30109079Saccharum spontaneumOryza longistaminata8.6121.1685.47172forward

Expression of CNT30447626

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MPLPRSGKLTLQGSTTSKVTEPSKFTTPHVIFF*

>peptide 2 (29 aa)
MCVTVAIKANHGLIRLKRFVSRFPTKLCN*

>peptide 3 (63 aa)
MMWAPSSLQQGCAVMSPSNHQTEVTVYKLLCSLLLSPKVLMDPSSSCFRPSWIWSTCCHCIWL*

>peptide 4 (79 aa)
PGYCLGLTNTSIAALAAHLAPASGHFPGAAAGTMGPAPSLPTRRRFLIRPLRFPYSVCRLVRPSSSSSAALPTHCVLPA*

>peptide 5 (59 aa)
MSLFLSREHCAPMNRSPQRLANSMAEYPMSSMTLMHEGCIFDGNSSSFKHNCCQLYVIV*

>peptide 6 (61 aa)
CRATVWASRTPQSQPSLHTSLQLPATSQAPPREQWDRPRRCPPAGASSFVRCGFPTASAVW*

>peptide 7 (89 aa)
AGLLFGPHEHLNRSPRCTPRSSFRPLPRRRRGNNGTGPVAAHPPALPHSSAAVSLQRLPSGETLFFFLCCAPHSLRPACLSWGAARARA*

>peptide 8 (48 aa)
MDLVYMLSLYLAVTEPSTLLVHIENEEQRPGLFSFNHADNQACIPLHG*

>peptide 9 (48 aa)
MFDVLLRYSTVMPLPTTTHTETHEALALPSRFTNLRVGSRPGNGFLKI*

Sequence

>CNT30447626
TGCCGGGCTACTGTTTGGGCCTCACGAACACCTCAATCGCAGCCCTCGCTGCACACCTCGCTCCAGCTTCCGGCCACTTCCCAGGCGCCGCCGCGGGAAC
AATGGGACCGGCCCCGTCGCTGCCCACCCGCCGGCGCTTCCTCATTCGTCCGCTGCGGTTTCCCTACAGCGTCTGCCGTCTGGTGAGACCCTCTTCTTCT
TCCTCTGCTGCGCTCCCCACTCATTGCGTCCTGCCTGCCTGAGCTGGGGTGCTGCTCGTGCCCGTGCATGATGTGGGCACCTTCATCGCTGCAGCAAGGT
TGTGCTGTGATGTCTCCATCCAATCATCAGACTGAGGTCACAGTATACAAACTCCTTTGTTCTTTGTTGCTGTCGCCGAAGGTCCTAATGGACCCCTCTT
CTTCCTGCTTCAGGCCATCATGGATTTGGTCTACATGCTGTCATTGTATTTGGCTGTGACTGAGCCTTCAACATTACTGGTTCACATTGAAAACGAGGAA
CAAAGGCCTGGTTTGTTTTCTTTTAATCATGCAGATAATCAAGCCTGCATTCCCTTGCATGGTTAGTTACCTGTCTTACATTATTTAGCTTTTTAATAGT
TTTGCTTATGTAATATATAGCTCTATTAATCTACATATAAGATTGCCTGTGATTTATTTGTTTTTAGATATCTCTTATACAATGTTTGATGTGCTGCTTC
GTTATAGTACAGTAATGCCCCTCCCCACCACCACCCACACAGAGACACATGAAGCTCTGGCACTGCCTAGCCGCTTCACTAATTTAAGAGTTGGTTCAAG
GCCAGGAAATGGTTTCCTCAAAATCTGAAGTGAAAAAAGCGATTCCCAAAAGGTTTTATAGGGGTGTTTAGTTCGTGGGTTGAAAAATTTAGGGTGTCAC
GTCAAATGTTTTATGAGATGTTCAGGAGTGTTCGGATACTAATAAAAAAACCAATTACATAACTCACCTGGAAACCGCGAGATGAATTTATTAAGCCTAA
TTAATTCGTCATTAGCACATGTGTGTTACTGTAGCAATTAAGGCTAATCATGGACTAATTAGGCTTAAAAGATTCGTCTCGCGGTTTCCAACCAAACTGT
GTAATTAGTTATTTTTTCGTCTACATTTAATACTCTATGCATTTATCCAAACATCCGATGTGGTGAAATTTTTTTGGAAGGAACTAAACACCCCCTGATT
CCCAATGCCTGTTGCTGAACTGGAACTGTGAATCTCATTTATTTCACTTTAATTTGTATGCAGGAGGCTGCTATTGATTGCACATCTTCTCTCCAAACTT
TATGTCCCTATTCCTTTCAAGAGAACATTGTGCACCCATGAATCGTAGCCCTCAACGACTCGCAAACTCAATGGCGGAGTACCCGATGTCGTCAATGACC
CTGATGCATGAAGGTTGCATATTTGATGGTAATTCATCCTCTTTTAAACATAATTGTTGCCAATTATATGTGATAGTCTAATTCTATATGGTTGTATGCC
ACTTCCACGCTCAGGAAAATTGACACTTCAGGGATCAACCACATCGAAAGTCACAGAACCATCCAAATTCACTACCCCTCATGTTATCTTTTTTTAACAT
GAAATACAGCAGGGGAGGCCCCCACTGTTAAATTTTATTAAAAAAAAGAGAAGCTATATAGAAAACCTCCAAAGGTAGGAGAAACAATAGAGGAAAAGAA
AACCCAGGGGAGGGACAATTAGAAAACTAAACTAAGGTAGCTATACAATCTAGGAAGACATGACGTTTAAACTCACTAAATCTATGGGCTTGTAATTTGG
CCTCAACACAGAAAGAGCTCTTCCAGGAAACAAAGGAGGGCCGGCCTCTATCGAAGATAAAATTGTTTCTTTGCTTCCAAATTTCCCATGCCGCAATGGT
GAAAATCTCCATGAAAAAGGTGCTTTGATATTGAAGCTTCGCCTGATGCATCATTTGAAAGAATTCCAAAGAGAAATCCCAGCTAATTCCAAGATGC